Pattern Recognition in Bioinformatics: Third IAPR International Conference, PRIB 2008, Melbourne, Australia, October 15-17, 2008. Proceedings

Front Matter....Pages -
Sequence Based Prediction of Protein Mutant Stability and Discrimination of Thermophilic Proteins....Pages 1-12
A Method to Find Sequentially Separated Motifs in Biological Sequences (SSMBS)....Pages 13-27
Predicting SUMOylation Sites....Pages 28-40
DFS Based Partial Pathways in GA for Protein Structure Prediction....Pages 41-53
Evaluation of the Stability of Folding Nucleus upon Mutation....Pages 54-65
Prediction of Protein Beta-Sheets: Dynamic Programming versus Grammatical Approach....Pages 66-77
Using Multi-scale Glide Zoom Window Feature Extraction Approach to Predict Protein Homo-oligomer Types....Pages 78-86
Extraction of Binding Sites in Proteins by Searching for Similar Local Molecular Surfaces....Pages 87-97
A Clustering Based Hybrid System for Mass Spectrometry Data Analysis....Pages 98-109
A Modified Markov Clustering Approach for Protein Sequence Clustering....Pages 110-120
Feature Selection and Classification for Small Gene Sets....Pages 121-131
Pseudoknot Identification through Learning TAG RNA ....Pages 132-143
Support Vector Based T-Score for Gene Ranking....Pages 144-153
Prediction of Transcription Factor Families Using DNA Sequence Features....Pages 154-164
g-MARS: Protein Classification Using Gapped Markov Chains and Support Vector Machines....Pages 165-177
Domain-Domain Interaction Identification with a Feature Selection Approach....Pages 178-186
Dividing Protein Interaction Networks by Growing Orthologous Articulations....Pages 187-200
Constraint Minimization for Efficient Modeling of Gene Regulatory Network....Pages 201-213
Fusion of Gene Regulatory and Protein Interaction Networks Using Skip-Chain Models....Pages 214-224
TopEVM: Using Co-occurrence and Topology Patterns of Enzymes in Metabolic Networks to Construct Phylogenetic Trees....Pages 225-236
Generating Synthetic Gene Regulatory Networks....Pages 237-249
Gene Selection for Microarray Data by a LDA-Based Genetic Algorithm....Pages 250-261
Sequential Forward Selection Approach to the Non-unique Oligonucleotide Probe Selection Problem....Pages 262-275
On Finding and Interpreting Patterns in Gene Expression Data from Time Course Experiments....Pages 276-287
Microarray Design Using the Hilbert–Schmidt Independence Criterion....Pages 288-298
Identifying Non-random Patterns from Gene Expression Profiles....Pages 299-310
A Study on the Importance of Differential Prioritization in Feature Selection Using Toy Datasets....Pages 311-322
Weighted Top Score Pair Method for Gene Selection and Classification....Pages 323-333
Identifying Conserved Discriminative Motifs....Pages 334-348
Exploratory Data Analysis for Investigating GC-MS Biomarkers....Pages 349-358
Multi-relational Data Mining for Tetratricopeptide Repeats (TPR)-Like Superfamily Members in Leishmania spp .: Acting-by-Connecting Proteins....Pages 359-372
Heuristic Non Parametric Collateral Missing Value Imputation: A Step Towards Robust Post-genomic Knowledge Discovery....Pages 373-387
Protein Expression Molecular Pattern Discovery by Nonnegative Principal Component Analysis....Pages 388-399
Gene Ontology Assisted Exploratory Microarray Clustering and Its Application to Cancer....Pages 400-411
Discovery of Biomarkers for Hexachlorobenzene Toxicity Using Population Based Methods on Gene Expression Data....Pages 412-423
Exploiting Fine-Grained Parallelism in the Phylogenetic Likelihood Function with MPI, Pthreads, and OpenMP: A Performance Study....Pages 424-435
Massively Parallelized DNA Motif Search on the Reconfigurable Hardware Platform COPACOBANA....Pages 436-447
GPU-MEME: Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences....Pages 448-459
Accelerating BLASTP on the Cell Broadband Engine....Pages 460-470
Back Matter....Pages -