Pattern Recognition in Bioinformatics: 6th IAPR International Conference, PRIB 2011, Delft, The Netherlands, November 2-4, 2011. Proceedings

Front Matter....Pages -
A New Framework for Co-clustering of Gene Expression Data....Pages 1-12
Biclustering of Expression Microarray Data Using Affinity Propagation....Pages 13-24
A Two-Way Bayesian Mixture Model for Clustering in Metagenomics....Pages 25-36
CRiSPy-CUDA: Computing Species Richness in 16S rRNA Pyrosequencing Datasets with CUDA....Pages 37-49
New Gene Subset Selection Approaches Based on Linear Separating Genes and Gene-Pairs....Pages 50-62
Identification of Biomarkers for Prostate Cancer Prognosis Using a Novel Two-Step Cluster Analysis....Pages 63-74
Renal Cancer Cell Classification Using Generative Embeddings and Information Theoretic Kernels....Pages 75-86
Integration of Epigenetic Data in Bayesian Network Modeling of Gene Regulatory Network....Pages 87-96
Metabolic Pathway Inference from Time Series Data: A Non Iterative Approach....Pages 97-108
Highlighting Metabolic Strategies Using Network Analysis over Strain Optimization Results....Pages 109-120
Wrapper- and Ensemble-Based Feature Subset Selection Methods for Biomarker Discovery in Targeted Metabolomics....Pages 121-132
Ensemble Logistic Regression for Feature Selection....Pages 133-144
Gene Selection in Time-Series Gene Expression Data....Pages 145-156
Multi-task Drug Bioactivity Classification with Graph Labeling Ensembles....Pages 157-167
A Bilinear Interpolation Based Approach for Optimizing Hematoxylin and Eosin Stained Microscopical Images....Pages 168-178
Automatic Localization of Interest Points in Zebrafish Images with Tree-Based Methods....Pages 179-190
A New Gene Selection Method Based on Random Subspace Ensemble for Microarray Cancer Classification....Pages 191-201
A Comparison on Score Spaces for Expression Microarray Data Classification....Pages 202-213
Flux Measurement Selection in Metabolic Networks....Pages 214-224
Lagrangian Relaxation Applied to Sparse Global Network Alignment....Pages 225-236
Stability of Inferring Gene Regulatory Structure with Dynamic Bayesian Networks....Pages 237-246
Integrating Protein Family Sequence Similarities with Gene Expression to Find Signature Gene Networks in Breast Cancer Metastasis....Pages 247-259
Estimating the Class Posterior Probabilities in Protein Secondary Structure Prediction....Pages 260-271
Shape Matching by Localized Calculations of Quasi-Isometric Subsets, with Applications to the Comparison of Protein Binding Patches....Pages 272-283
Using Kendall- τ Meta-Bagging to Improve Protein-Protein Docking Predictions....Pages 284-295
PAAA: A Progressive Iterative Alignment Algorithm Based on Anchors....Pages 296-305
Heat Diffusion Based Dissimilarity Analysis for Schizophrenia Classification....Pages 306-317
Epithelial Area Detection in Cytokeratin Microscopic Images Using MSER Segmentation in an Anisotropic Pyramid....Pages 318-329
Pattern Recognition in High-Content Cytomics Screens for Target Discovery - Case Studies in Endocytosis....Pages 330-342
Back Matter....Pages -