GPU Solutions to Multi-scale Problems in Science and Engineering

Front Matter....Pages i-xiii
Front Matter....Pages 1-1
Why Do Scientists and Engineers Need GPU’s Today?....Pages 3-11
Happenings at the GPU Conference....Pages 13-30
Front Matter....Pages 31-31
Efficiency, Energy Efficiency and Programming of Accelerated HPC Servers: Highlights of PRACE Studies....Pages 33-78
GRAPE and GRAPE-DR....Pages 79-87
Front Matter....Pages 89-89
P array : A Unifying Array Representation for Heterogeneous Parallelism....Pages 91-113
Practical Random Linear Network Coding on GPUs....Pages 115-130
Preliminary Implementation of PETSc Using GPUs....Pages 131-140
Front Matter....Pages 141-141
Multi-scale Continuum-Particle Simulation on CPU–GPU Hybrid Supercomputer....Pages 143-161
GPU Best Practices for HPC Applications at Industry Scale....Pages 163-172
Simulation of 1D Condensing Flows with CESE Method on GPU Cluster....Pages 173-185
Two-Way Coupled Sprays and Liquid Surface: A GPU-Based Multi-Scale Fluid Animation Method....Pages 187-199
High Performance Implementation of Binomial Option Pricing Using CUDA....Pages 201-214
Research of Acceleration MS-Alignment Identifying Post-Translational Modifications on GPU....Pages 215-232
Front Matter....Pages 233-233
GPU Tuning for First-Principle Electronic Structure Simulations....Pages 235-246
Nucleation and Reaction of Dislocations in Some Metals and Intermetallic Compound TiAl....Pages 247-258
Front Matter....Pages 259-259
Large-Scale Numerical Weather Prediction on GPU Supercomputer....Pages 261-270
Targeting Atmospheric Simulation Algorithms for Large, Distributed-Memory, GPU-Accelerated Computers....Pages 271-282
Investigation of Solving 3D Navier–Stokes Equations with Hybrid Spectral Scheme Using GPU....Pages 283-293
Correlation of Reservoir and Earthquake by Multi Temporal-Spatial Scale Flow Driven Pore-Network Crack Model in Parallel CPU and GPU Platform....Pages 295-303
A Full GPU Simulation of Evolving Fracture Networks in a Heterogeneous Poro-Elasto-Plastic Medium with Effective-Stress-Dependent Permeability....Pages 305-319
Front Matter....Pages 259-259
GPU Implementation of Multigrid Solver for Stokes Equation with Strongly Variable Viscosity....Pages 321-333
High Rayleigh Number Mantle Convection on GPU....Pages 335-352
High-Order Discontinuous Galerkin Methods by GPU Metaprogramming....Pages 353-374
Accelerating Large-Scale Simulation of Seismic Wave Propagation by Multi-GPUs and Three-Dimensional Domain Decomposition....Pages 375-389
Support Operator Rupture Dynamics on GPU....Pages 391-404
Front Matter....Pages 405-405
A Geometric Multigrid Solver on GPU Clusters....Pages 407-422
Accelerating 2-Dimensional CFD on Multi-GPU Supercomputer....Pages 423-435
Efficient Rendering of Order Independent Transparency on the GPUs....Pages 437-455
Performance Evaluation of Fast Fourier Transform Application on Heterogeneous Platforms....Pages 457-486
Accurate Evaluation of Local Averages on GPGPUs....Pages 487-501
Accelerating Swarm Intelligence Algorithms with GPU-Computing....Pages 503-515
Asynchronous Parallel Logic Simulation on Modern Graphics Processors....Pages 517-541
Implementations of Main Algorithms for Generalized Symmetric Eigenproblem on GPU Accelerator....Pages 543-554
Using Mixed Precision Algorithm for LINPACK Benchmark on AMD GPU....Pages 555-560
Parallel Lattice Boltzmann Method on CUDA Architecture....Pages 561-569
Front Matter....Pages 571-571
Iterative Deblurring of Large 3D Datasets from Cryomicrotome Imaging Using an Array of GPUs....Pages 573-585
WebViz: A Web-Based Collaborative Interactive Visualization System for Large-Scale Data Sets....Pages 587-606
Interactive Visualization Tool for Planning Cancer Treatment....Pages 607-637
High Throughput Heterogeneous Computing and Interactive Visualization on a Desktop Supercomputer....Pages 639-652
Applications of Microtomography to Multiscale System Dynamics: Visualisation, Characterisation and High Performance Computation....Pages 653-674
Front Matter....Pages 571-571
Three-Dimensional Reconstruction of Electron Tomography Using Graphic Processing Units (GPUs)....Pages 675-689
Back Matter....Pages 691-693