Environmental Microbiology

Content: 
Anoxic Media Design, Preparation, and Considerations Review Article
Pages 3-16
Caroline M. Plugge

Enrichment and Isolation of Anaerobic Hydrocarbon‐Degrading Bacteria Review Article
Pages 17-34
Irene A. Davidova, Joseph M. Suflita

Anammox Organisms: Enrichment, Cultivation, and Environmental Analysis Review Article
Pages 34-57
Mike Jetten, Markus Schmid, Katinka van de Pas‐Schoonen, Jaap Sinninghe Damsté, Marc Strous

Enrichment and Isolation of Ferric‐Iron‐ and Humic‐Acid‐Reducing Bacteria Review Article
Pages 58-77
Kristina L. Straub, Andreas Kappler, Bernhard Schink

Enrichment, Cultivation, and Detection of Reductively Dechlorinating Bacteria Review Article
Pages 77-111
Frank E. Löffler, Robert A. Sanford, Kirsti M. Ritalahti

Enrichment and Isolation of Iron‐Oxidizing Bacteria at Neutral pH Review Article
Pages 112-123
David Emerson, Melissa Merrill Floyd

High‐Throughput Cultivation of Microorganisms Using Microcapsules Review Article
Pages 124-130
Karsten Zengler, Marion Walcher, Greg Clark, Imke Haller, Gerardo Toledo, Trevin Holland, Eric J. Mathur, Gary Woodnutt, Jay M. Short, Martin Keller

Chemotaxis and Behavioral Physiology of Not‐Yet‐Cultivated Microbes Review Article
Pages 133-147
Jörg Overmann

Analysis of Microbial Communities with Electrochemical Microsensors and Microscale Biosensors Review Article
Pages 147-166
Niels Peter Revsbech

Optical Microsensors for Analysis of Microbial Communities Review Article
Pages 166-199
Michael KГјhl

In Situ Measurements of Metabolite Fluxes: Microinjection of Radiotracers into Insect Guts and Other Small Compartments Review Article
Pages 200-212
Andreas Brune, Michael Pester

Assaying for the 3‐Hydroxypropionate Cycle of Carbon Fixation Review Article
Pages 212-221
Michael HГјgler, Georg Fuchs

Analysis of Trace Hydrogen Metabolism Review Article
Pages 222-237
Frank E. Löffler, Robert A. Sanford

Advances in Microscopy: Microautoradiography of Single Cells Review Article
Pages 237-256
Jeppe Lund Nielsen, Per Halkjær Nielsen

Atomic Force Microscopy of Bacterial Communities Review Article
Pages 256-268
Megan E. NГєГ±ez, Mark O. Martin, Phyllis H. Chan, Lin K. Duong, Anil R. Sindhurakar, Eileen M. Spain

Nucleic Acid Recovery from Complex Environmental Samples Review Article
Pages 271-292
Kevin J. Purdy

The Application of Rarefaction Techniques to Molecular Inventories of Microbial Diversity Review Article
Pages 292-308
Jennifer B. Hughes, Jessica J. Hellmann

Culture‐Independent Microbial Community Analysis with Terminal Restriction Fragment Length Polymorphism Review Article
Pages 308-329
Terence L. Marsh

Quantitative Community Analysis: Capillary Electrophoresis Techniques Review Article
Pages 329-337
Jeremy D. Semrau, Jong‐In Han

In Situ Functional Gene Analysis: Recognition of Individual Genes by Fluorescence In Situ Hybridization Review Article
Pages 338-351
Katrin Zwirglmaier, Katrin Fichtl, Wolfgang Ludwig

Simultaneous Fluorescence In Situ Hybridization of mRNA and rRNA for the Detection of Gene Expression in Environmental Microbes Review Article
Pages 352-371
Annelie Pernthaler, Jakob Pernthaler

Community‐Level Analysis of Phototrophy: psbA Gene Diversity Review Article
Pages 372-380
Gil Zeidner, Oded BГ©jГ 

Quantitative Analysis of nifH Genes and Transcripts from Aquatic Environments Review Article
Pages 380-394
Steven M. Short, Jonathan P. Zehr

Community Level Analysis: Genetic and Biogeochemical Approaches to Investigate Community Composition and Function in Aerobic Ammonia Oxidation Review Article
Pages 395-413
Bess B. Ward, Gregory D. O'Mullan

Community‐Level Analysis: Key Genes of Aerobic Methane Oxidation Review Article
Pages 413-427
Marc G. Dumont, J. Colin Murrell

Methyl‐Coenzyme M Reductase Genes: Unique Functional Markers for Methanogenic and Anaerobic Methane‐Oxidizing Archaea Review Article
Pages 428-442
Michael W. Friedrich

Community‐Level Analysis: Genes Encoding Methanopterin‐Dependent Enzymes Review Article
Pages 443-454
Marina G. Kalyuzhnaya, Ludmila Chistoserdova

Community‐Level Analysis: Key Genes of CO2‐Reductive Acetogenesis Review Article
Pages 454-469
Charles R. Lovell, Adam B. Leaphart

Functional Marker Genes for Identification of Sulfate‐Reducing Prokaryotes Review Article
Pages 469-489
Michael Wagner, Alexander Loy, Michael Klein, Natuschka Lee, Niels B. Ramsing, David A. Stahl, Michael W. Friedrich

Series Editors
Page ii

Contributors to Volume 397
Pages ix-xii

Preface
Page xiii

Methods in Enzymology
Pages xv-xxxviii

Author Index
Pages 491-515

Subject Index
Pages 517-528

Table of Contents
Pages v-vii