Data Integration in the Life Sciences: 13th International Conference, DILS 2018, Hannover, Germany, November 20-21, 2018, Proceedings

Front Matter ....Pages I-XI
Front Matter ....Pages 1-1
 Do Scaling Algorithms Preserve Word2Vec Semantics? A Case Study for Medical Entities  (Janus Wawrzinek, José María González Pinto, Philipp Markiewka, Wolf-Tilo Balke)....Pages 3-16
 Combining Semantic and Lexical Measures to Evaluate Medical Terms Similarity  (Silvio Domingos Cardoso, Marcos Da Silveira, Ying-Chi Lin, Victor Christen, Erhard Rahm, Chantal Reynaud-Delaître et al.)....Pages 17-32
 Construction and Visualization of Dynamic Biological Networks: Benchmarking the Neo4J Graph Database  (Lena Wiese, Chimi Wangmo, Lukas Steuernagel, Armin O. Schmitt, Mehmet Gültas)....Pages 33-43
 A Knowledge-Driven Pipeline for Transforming Big Data into Actionable Knowledge  (Maria-Esther Vidal, Kemele M. Endris, Samaneh Jozashoori, Guillermo Palma)....Pages 44-49
 Leaving No Stone Unturned: Using Machine Learning Based Approaches for Information Extraction from Full Texts of a Research Data Warehouse  (Johanna Fiebeck, Hans Laser, Hinrich B. Winther, Svetlana Gerbel)....Pages 50-58
Front Matter ....Pages 59-59
 Towards Research Infrastructures that Curate Scientific Information: A Use Case in Life Sciences  (Markus Stocker, Manuel Prinz, Fatemeh Rostami, Tibor Kempf)....Pages 61-74
 Interactive Visualization for Large-Scale Multi-factorial Research Designs  (Andreas Friedrich, Luis de la Garza, Oliver Kohlbacher, Sven Nahnsen)....Pages 75-84
 FedSDM: Semantic Data Manager for Federations of RDF Datasets  (Kemele M. Endris, Maria-Esther Vidal, Sören Auer)....Pages 85-90
 Poster Paper Data Integration for Supporting Biomedical Knowledge Graph Creation at Large-Scale  (Samaneh Jozashoori, Tatiana Novikova, Maria-Esther Vidal)....Pages 91-96
 DISBi: A Flexible Framework for Integrating Systems Biology Data  (Rüdiger Busche, Henning Dannheim, Dietmar Schomburg)....Pages 97-102
Front Matter ....Pages 103-103
 Using Machine Learning to Distinguish Infected from Non-infected Subjects at an Early Stage Based on Viral Inoculation  (Ghanshyam Verma, Alokkumar Jha, Dietrich Rebholz-Schuhmann, Michael G. Madden)....Pages 105-121
 Automated Coding of Medical Diagnostics from Free-Text: The Role of Parameters Optimization and Imbalanced Classes  (Luiz Virginio, Julio Cesar dos Reis)....Pages 122-134
 A Learning-Based Approach to Combine Medical Annotation Results  (Victor Christen, Ying-Chi Lin, Anika Groß, Silvio Domingos Cardoso, Cédric Pruski, Marcos Da Silveira et al.)....Pages 135-143
 Knowledge Graph Completion to Predict Polypharmacy Side Effects  (Brandon Malone, Alberto García-Durán, Mathias Niepert)....Pages 144-149
Front Matter ....Pages 151-151
 Lung Cancer Concept Annotation from Spanish Clinical Narratives  (Marjan Najafabadipour, Juan Manuel Tuñas, Alejandro Rodríguez-González, Ernestina Menasalvas)....Pages 153-163
 Linked Data Based Multi-omics Integration and Visualization for Cancer Decision Networks  (Alokkumar Jha, Yasar Khan, Qaiser Mehmood, Dietrich Rebholz-Schuhmann, Ratnesh Sahay)....Pages 164-181
 The Hannover Medical School Enterprise Clinical Research Data Warehouse: 5 Years of Experience  (Svetlana Gerbel, Hans Laser, Norman Schönfeld, Tobias Rassmann)....Pages 182-194
 User-Driven Development of a Novel Molecular Tumor Board Support Tool  (Marc Halfmann, Holger Stenzhorn, Peter Gerjets, Oliver Kohlbacher, Uwe Oestermeier)....Pages 195-199
 Using Semantic Programming for Developing a Web Content Management System for Semantic Phenotype Data  (Lars Vogt, Roman Baum, Christian Köhler, Sandra Meid, Björn Quast, Peter Grobe)....Pages 200-206
 Converting Alzheimer’s Disease Map into a Heavyweight Ontology: A Formal Network to Integrate Data  (Vincent Henry, Ivan Moszer, Olivier Dameron, Marie-Claude Potier, Martin Hofmann-Apitius, Olivier Colliot)....Pages 207-215
Back Matter ....Pages 217-218