Bioinformatics Research and Applications: 12th International Symposium, ISBRA 2016, Minsk, Belarus, June 5-8, 2016, Proceedings

Front Matter....Pages I-XV
Front Matter....Pages 1-1
An Efficient Algorithm for Finding All Pairs k-Mismatch Maximal Common Substrings....Pages 3-14
Poisson-Markov Mixture Model and Parallel Algorithm for Binning Massive and Heterogenous DNA Sequencing Reads....Pages 15-26
FSG: Fast String Graph Construction for De Novo Assembly of Reads Data....Pages 27-39
OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads....Pages 40-51
High-Performance Sensing of DNA Hybridization on Surface of Self-organized MWCNT-Arrays Decorated by Organometallic Complexes....Pages 52-66
Towards a More Accurate Error Model for BioNano Optical Maps....Pages 67-79
HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads....Pages 80-92
Front Matter....Pages 93-93
Genome-Wide Structural Modeling of Protein-Protein Interactions....Pages 95-105
Identifying Essential Proteins by Purifying Protein Interaction Networks....Pages 106-116
Differential Functional Analysis and Change Motifs in Gene Networks to Explore the Role of Anti-sense Transcription....Pages 117-126
Predicting MicroRNA-Disease Associations by Random Walking on Multiple Networks....Pages 127-135
Progression Reconstruction from Unsynchronized Biological Data using Cluster Spanning Trees....Pages 136-147
Front Matter....Pages 149-149
Consistent Visualization of Multiple Rigid Domain Decompositions of Proteins....Pages 151-162
A Multiagent Ab Initio Protein Structure Prediction Tool for Novices and Experts....Pages 163-174
Filling a Protein Scaffold with a Reference....Pages 175-186
Front Matter....Pages 187-187
Mean Values of Gene Duplication and Loss Cost Functions....Pages 189-199
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies....Pages 200-210
Path-Difference Median Trees....Pages 211-223
NEMo: An Evolutionary Model with Modularity for PPI Networks....Pages 224-236
Multi-genome Scaffold Co-assembly Based on the Analysis of Gene Orders and Genomic Repeats....Pages 237-249
Front Matter....Pages 251-251
Selectoscope: A Modern Web-App for Positive Selection Analysis of Genomic Data....Pages 253-257
Methods for Genome-Wide Analysis of MDR and XDR Tuberculosis from Belarus....Pages 258-268
Haplotype Inference for Pedigrees with Few Recombinations....Pages 269-283
Improved Detection of 2D Gel Electrophoresis Spots by Using Gaussian Mixture Model....Pages 284-294
Back Matter....Pages 295-348