Advances in Computational Biology: Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics (CCBCOL)

Front Matter....Pages 1-15
Predictive Modeling of Signaling Transduction Mediated by Tyrosine-Kinase Receptors....Pages 1-6
Bioinformatic Analysis of Two Proteins with Suspected Linkage to Pulmonary Atresia with Intact Ventricular Septum....Pages 7-12
Construction and Comparison of Gene Co-expression Networks Based on Immunity Microarray Data from Arabidopsis , Rice, Soybean, Tomato and Cassava....Pages 13-19
 in silico Binding Free Energy Characterization of Cowpea Chlorotic Mottle Virus Coat Protein Homodimer Variants....Pages 21-28
Analysis of Binding Residues between PDGF-BB and Epidermal Growth Factor Receptor: A Computational Docking Study....Pages 29-39
Software as a Service for Supporting Biodiversity Conservation Decision Making....Pages 41-46
Structural and Functional Prediction of the Hypothetical Protein Pa2481 in Pseudomonas Aeruginosa Pao1 ....Pages 47-55
Exploration of the Effect of Input Data on the Modeling of Cellular Objective in Flux Balance Analysis (FBA)....Pages 57-62
Prediction of Potential Kinase Inhibitors in Leishmania spp. through a Machine Learning and Molecular Docking Approach....Pages 63-70
Functional Protein Prediction Using HMM Based Feature Representation and Relevance Analysis....Pages 71-76
High Throughput Location Proteomics in Confocal Images from the Human Protein Atlas Using a Bag-of-Features Representation....Pages 77-82
Measuring Complexity in an Aquatic Ecosystem....Pages 83-89
Possible Antibiofilm Effect of Peptides Derived from IcaR Repressor of Staphylococcus epidermidis Responsible for Hospital-Acquired Sepsis....Pages 91-95
“Head to Tail” Tool Analysis through ClustalW Alignment Algorithms and Construction of Distance Method Neighbor-Joining Trees Based on Genus Fusarium Genomic Distances....Pages 97-102
False Positive Reduction in Automatic Segmentation System....Pages 103-108
Photosynthesis Thermodynamic Efficiency Facing Climate Change....Pages 109-114
Thermogenesis Driven by ATP Hydrolysis in a Model with Cubic Autocatalysis....Pages 115-120
Towards a Linked Open Data Model for Coffee Functional Relationships....Pages 121-126
Stability Analysis of Antimicrobial Peptides in Solvation Conditions by Molecular Dynamics....Pages 127-131
Application of Genome Studies of Coffee Rust....Pages 133-139
 In-silico Analysis of the Active Cavity of N-Acetylgalactosamine-6-Sulfate Sulfatase in Eight Species....Pages 141-146
Gene Predictors Ensemble for Complex Metagenomes....Pages 147-154
Classification of Antimicrobial Peptides by Using the p -spectrum Kernel and Support Vector Machines....Pages 155-160
Genomic Relationships among Different Timor Hybrid ( Coffea L.) Accessions as Revealed by SNP Identification and RNA-Seq Analysis....Pages 161-168
A Combined Sensitivity and Metabolic Flux Analysis Unravel the Importance of Amino Acid Feeding Strategies in Clavulanic Acid Biosynthesis....Pages 169-175
Flux Balance Analysis and Strain Optimization for Ethanol Production in Saccharomyces cerevisiae ....Pages 177-182
Domain Ontology-Based Query Expansion: Relationships Types-Centered Analysis Using Gene Ontology....Pages 183-188
FS-Tree: Sequential Association Rules and First Applications to Protein Secondary Structure Analysis....Pages 189-198
Presentation and Evaluation of ABMS (Automatic Blast for Massive Sequencing)....Pages 199-204
 In silico Analysis of Iduronate 2 Sulfatase Mutations in Colombian Patients with Hunter Syndrome (MPSII)....Pages 205-212
Phylogenetic Analysis of Four Dung Beetle Species of Neotropical Genus Oxyternon (Coleoptera: Scarabaeidae: Scarabaeinae) Based on 28S and COI Partial Regions....Pages 213-219
Limits to Sequencing and de novo Assembly: Classic Benchmark Sequences for Optimizing Fungal NGS Designs....Pages 221-230
Optimal Control for a Discrete Time Influenza Model....Pages 231-237
Transcriptomics of the Immune System of Hydrozoan Hydractinia symbiolongicarpus Using High Throughput Sequencing Methods....Pages 239-245
Fuzzy Model Proposal for the Coffee Berry Borer Expansion at Colombian Coffee Fields....Pages 247-252
Analysis of Structure and Hemolytic Activity Relationships of Antimicrobial Peptides (AMPs)....Pages 253-258
Candidates for New Molecules Controlling Allorecognition in Hydractinia symbiolongicarpus ....Pages 259-263
 Escherichia coli’s OmpA as Biosurfactant for Cosmetic Industry: Stability Analysis and Experimental Validation Based on Molecular Simulations....Pages 265-271
Molecular Cloning, Modelling and Docking with Curcumin of the Dengue Virus 2 NS5 Polymerase Domain....Pages 273-278
 In Silico Analysis for Biomass Synthesis under Different CO 2 Levels for Chlamydomonas reinhardtii Utilizing a Flux Balance Analysis Approach....Pages 279-285
Analysis of Metabolic Functionality and Thermodynamic Feasibility of a Metagenomic Sample from “El Coquito” Hot Spring....Pages 287-293
Identification of Small Non-coding RNAs in Bacterial Genome Annotation Using Databases and Computational Approaches....Pages 295-300
Structural Modeling of Toxoplasma gondii TGME49_289620 Proteinase....Pages 301-305
Diversification of the Major Histocompatibility Complex (MHC) -G and -B Loci in New World Primates....Pages 307-313
A Methodology for Optimizing the E-value Threshold in Alignment-Based Gene Ontology Prediction Using the ROC Curve....Pages 315-320
Hydrolytic Activity of OXA and CTX-M beta-Lactamases against beta-Lactamic Antibiotics....Pages 321-326
Analysis in Silico of 5’-Terminal Secondary Structures of Hepatitis C Virus Sequences Genotype 1 from Colombia....Pages 327-335
 In Silico Hybridization System for Mapping Functional Genes of Soil Microorganism Using Next Generation Sequencing....Pages 337-344
Identification of Differently Expresed Proteins Related to Drillings Fluids Exposure in Hydractinia Symbiolongicarpus by Mass Spectrometry....Pages 345-353
 In silico Modificiton of Cathelicidins Generates Analogous Peptides with Improved Antimycobacterial Activity....Pages 355-362
Harmonizing Protection and Publication of Research Findings in Biosciences and Bioinformatics....Pages 363-370
Mathematical Modeling of Lignocellulolytic Enzyme Production from Three Species of White Rot Fungi by Solid-State Fermentation....Pages 371-377
Bioinformatics Tools and Data Mining for Therapeutic Drug Analysis....Pages 379-386
iTRAQ, The High Throughput Data Analysis of Proteins to Understand Immunologic Expression in Insect....Pages 387-394
Back Matter....Pages 395-397