Advances in Bioinformatics and Computational Biology: 8th Brazilian Symposium on Bioinformatics, BSB 2013, Recife, Brazil, November 3-7, 2013, Proceedings

Front Matter....Pages -
The Trouble with Long-Range Base Pairs in RNA Folding....Pages 1-11
Roles of ROR α on Transcriptional Expressions in the Mammalian Circadian Regulatory System....Pages 12-23
HybHap: A Fast and Accurate Hybrid Approach for Haplotype Inference on Large Datasets....Pages 24-35
Restricted DCJ-Indel Model Revisited....Pages 36-46
MSA-GPU: Exact Multiple Sequence Alignment Using GPU....Pages 47-58
MultiSETTER - Multiple RNA Structure Similarity Algorithm....Pages 59-70
Assessing the Accuracy of the SIRAH Force Field to Model DNA at Coarse Grain Level....Pages 71-81
How to Multiply Dynamic Programming Algorithms....Pages 82-93
Influence of Scaffold Stability and Electrostatics on Top7-Based Engineered Helical HIV-1 Epitopes....Pages 94-103
Random Forest and Gene Networks for Association of SNPs to Alzheimer’s Disease....Pages 104-115
Multilayer Cluster Heat Map Visualizing Biological Tensor Data....Pages 116-125
On the 1.375-Approximation Algorithm for Sorting by Transpositions in O ( n log n ) Time....Pages 126-135
ncRNA-Agents: A Multiagent System for Non-coding RNA Annotation....Pages 136-147
Inference of Genetic Regulatory Networks Using an Estimation of Distribution Algorithm....Pages 148-159
A Network-Based Meta-analysis Strategy for the Selection of Potential Gene Modules in Type 2 Diabetes....Pages 160-169
RAIDER: R apid A b I nitio D etection of E lementary R epeats....Pages 170-180
A Probabilistic Model Checking Analysis of the Potassium Reactions with the Palytoxin and Na  +  /K  +  -ATPase Complex....Pages 181-193
False Discovery Rate for Homology Searches....Pages 194-201
A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome....Pages 202-213
Back Matter....Pages -