The Zebrafish: Genetics, Genomics, and Informatics

Content: 
Series Editor
Page ii

Contributors
Pages xv-xxi

Preface
Pages xxiii-xxiv

Dedication
Page xxv

Retroviral-Mediated Insertional Mutagenesis in Zebrafish Original Research Article
Pages 3-20
Adam Amsterdam, Nancy Hopkins

Genetic Screens for Maternal-Effect Mutations Original Research Article
Pages 21-51
Francisco Pelegri, Mary C. Mullins

Behavioral Screening Assays in Zebrafish Original Research Article
Pages 53-68
Michael B. Orger, Ethan Gahtan, Akira Muto, Patrick Page-McCaw, Matthew C. Smear, Herwig Baier

Target-Selected Gene Inactivation in Zebrafish Original Research Article
Pages 69-90
Erno Wienholds, Ronald H.A. Plasterk

A High-Throughput Method for Identifying N-Ethyl-N-Nitrosourea (ENU)-Induced Point Mutations in Zebrafish Original Research Article
Pages 91-112
Bruce W. Draper, Claire M. McCallum, Jennifer L. Stout, Ann J. Slade, Cecilia B. Moens

Production of Zebrafish Germline Chimeras by Using Cultured Embryonic Stem (ES) Cells Original Research Article
Pages 113-119
Lianchun Fan, Jennifer Crodian, Paul Collodi

Nonconventional Antisense in Zebrafish for Functional Genomics Applications Original Research Article
Pages 121-136
Stephen C. Ekker

Downregulation of Gene Expression with Negatively Charged Peptide Nucleic Acids (PNAs) in Zebrafish Embryos Original Research Article
Pages 137-158
Eric Wickstrom, Karen A. Urtishak, Michael Choob, Xiaobing Tian, Nitzan Sternheim, Laura M. Cross, Amy Rubinstein, Steven A. Farber

Photo-Mediated Gene Activation by Using Caged mRNA in Zebrafish Embryos Original Research Article
Pages 159-171
Hideki Ando, Toshiaki Furuta, Hitoshi Okamoto

Current Status of Medaka Genetics and Genomics: The Medaka Genome Initiative (MGI) Original Research Article
Pages 173-199
Manfred Schartl, Indrajit Nanda, Mariko Kondo, Michael Schmid, Shuichi Asakawa, Takashi Sasaki, Nobuyoshi Shimizu, Thorsten Henrich, Joachim Wittbrodt, Makoto Furutani-Seiki, Hisato Kondoh, Heinz Himmelbauer, Yunhan Hong, Akihiko Koga, Masaru Nonaka, Hiroshi Mitani, Akihiro Shima

Transgenesis and Gene Trap Methods in Zebrafish by Using the Tol2 Transposable Element Original Research Article
Pages 201-222
Koichi Kawakami

The Zebrafish Genome Project: Sequence Analysis and Annotation Original Research Article
Pages 225-239
Kerstin Jekosch

Molecular Cytogenetic Methodologies and a Bacterial Artificial Chromosome (BAC) Probe Panel Resource for Genomic Analyses in Zebrafish Original Research Article
Pages 241-254
Charles Lee, Amanda Smith

Automated Analysis of Conserved Syntenies for the Zebrafish Genome Original Research Article
Pages 255-271
John Postlethwait, Victor Ruotti, Michael J. Carvan, Peter J. Tonellato

Update of the Expressed Sequence Tag (EST) and Radiation Hybrid Panel Projects Original Research Article
Pages 273-293
Yi Zhou

Bacterial Artificial Chromosome (BAC) Clones and the Current Clone Map of the Zebrafish Genome Original Research Article
Pages 295-304
Romke Koch, Gerd-Jörg Rauch, Sean Humphray, Robert Geisler, Ronald Plasterk

The Zon Laboratory Guide to Positional Cloning in Zebrafish Original Research Article
Pages 305-329
Nathan Bahary, Alan Davidson, David Ransom, Jennifer Shepard, Howard Stern, Nikolaus Trede, Yi Zhou, Bruce Barut, Leonard I. Zon

Lessons from Transgenic Zebrafish Expressing the Green Fluorescent Protein (GFP) in the Myeloid Lineage Original Research Article
Pages 333-347
Karl Hsu, A.Thomas Look, John P. Kanki

Sleeping Beauty Transposon for Efficient Gene Delivery Original Research Article
Pages 349-362
Spencer Hermanson, Ann E. Davidson, Sridhar Sivasubbu, Darius Balciunas, Stephen C. Ekker

Transgene Manipulation in Zebrafish by Using Recombinases Original Research Article
Pages 363-379
Jie Dong, Gary W. Stuart

Highly Efficient Zebrafish Transgenesis Mediated by the Meganuclease I-SceI Original Research Article
Pages 381-401
Clemens Grabher, Jean-Stephane Joly, Joachim Wittbrodt

Cloning Zebrafish by Nuclear Transfer Original Research Article
Pages 403-411
Bensheng Ju, Haigen Huang, Ki-Young Lee, Shuo Lin

Data Mining the Zebrafish Genome Original Research Article
Pages 415-437
Lynn M. Schriml, Judy Sprague

The Zebrafish DVD Exchange Project: A Bioinformatics Initiative Original Research Article
Pages 439-457
Mark S. Cooper, Greg Sommers-Herivel, Cara T. Poage, Matthew B. McCarthy, Bryan D. Crawford, Carey Phillips

Comparative Genomics—An Application for Positional Cloning of the weissherbst Mutant Original Research Article
Pages 459-473
Anhua Song, Yi Zhou

Comparative Genomics in Erythropoietic Gene Discovery: Synergisms Between the Antarctic Icefishes and the Zebrafish Original Research Article
Pages 475-503
H.William Detrich III, Donald A. Yergeau

Spatial and Temporal Expression of the Zebrafish Genome by Large-Scale In Situ Hybridization Screening Original Research Article
Pages 505-519
Bernard Thisse, Vincent Heyer, Aline Lux, Violaine Alunni, Agnès Degrave, Iban Seiliez, Johanne Kirchner, Jean-Paul Parkhill, Christine Thisse

Design, Normalization, and Analysis of Spotted Microarray Data Original Research Article
Pages 521-543
F.B. Pichler, M.A. Black, L.C. Williams, D.R. Love

Comparative Genomics, cis-Regulatory Elements, and Gene Duplication Original Research Article
Pages 545-561
Allan Force, Cooduvalli Shashikant, Peter Stadler, Chris T. Amemiya

Zebrafish Facilities for Small and Large Laboratories Original Research Article
Pages 565-591
Bill Trevarrow

A Nursery that Improves Zebrafish Fry Survival Original Research Article
Pages 593-598
Peter Cattin, Phil Crosier

Genetic Backgrounds, Standard Lines, and Husbandry of Zebrafish Original Research Article
Pages 599-616
Bill Trevarrow, Barrie Robison

Common Diseases of Laboratory Zebrafish Original Research Article
Pages 617-643
Jennifer L. Matthews

Zebrafish Sperm Cryopreservation Original Research Article
Pages 645-659
Stéphane Berghmans, John P. Morris IV, John P. Kanki, A.Thomas Look

Index
Pages 661-678

Volumes in Series
Pages 679-686