Pulses, Sugar and Tuber Crops (Genome Mapping and Molecular Breeding in Plants)

Contents......Page 11
Contributors......Page 17
Abbreviations......Page 21
1.1.1 History of the Crop......Page 25
1.1.2 Botanical Description......Page 26
1.1.3 Economic Importance......Page 27
1.1.4 Objectives and Achievements of Classical Breeding......Page 28
1.2.1 Linkage Mapping Prior to 1990......Page 29
1.2.2 Linkage Mapping After 1990......Page 30
1.2.3 Map Integration......Page 32
1.3 Tagging and Mapping Favorable Genes and QTLs of Economic Importance......Page 36
1.4 Marker-Assisted Selection......Page 44
References......Page 46
2.1 Introduction......Page 56
2.2 Construction of Genetic Maps......Page 59
2.3 Gene Mapping......Page 60
2.4 QTLs Detected......Page 62
2.5 Marker-Assisted Breeding......Page 66
2.7 Advanced Works......Page 67
References......Page 68
3.1.1 Brief History: Origin and Distribution......Page 71
3.1.2 Morphological and Phenological Characteristics......Page 72
3.1.3 Production Systems and Economic Importance......Page 73
3.1.4 Nutritional Composition......Page 74
3.1.5 Classical Genetics and Breeding......Page 75
3.2 Molecular Phylogeny and Genome Organization......Page 76
3.3 Genetic Maps......Page 78
3.5 Marker-Assisted Cowpea Breeding......Page 81
References......Page 85
4.1.1 Morphological Description and Growth Characteristics......Page 90
4.1.2 Center of Origin, Botanical Origin, Domestication and Dissemination and Gene Pools......Page 91
4.1.3 Uses and Nutritional Information......Page 92
4.1.4 Economic Importance......Page 93
4.1.6 Cytoplasmic Genomes......Page 94
4.2.1 Mungbean Maps......Page 95
4.2.3 Microsatellites and Single Nucleotide Polymorphisms (SNPs)......Page 99
4.3.1 Bruchid Resistance......Page 100
4.3.2 Powdery Mildew Resistance......Page 102
4.3.3 MYMV Mungbean Yellow Mosaic Virus......Page 103
4.3.5 Hard-Seededness......Page 104
4.3.6 Seed Appearance Traits......Page 105
4.5 Future Scope of Research......Page 106
References......Page 107
5.1.1 Origin, Domestication and Taxonomy......Page 112
5.1.3 Genetic Resources......Page 113
5.1.4 Economic Importance and Current Breeding Objectives......Page 114
5.2.1 Morphological and Biochemical Markers......Page 116
5.2.3 Lens Genome Mapping......Page 117
5.2.4 Towards a Lens Consensus Map......Page 120
5.3.2 Quantitative Trait Loci Mapping......Page 121
5.3.3 Marker-Assisted Selection and Trait Pyramiding......Page 123
5.4 Future Scope of Works......Page 124
References......Page 125
6.1.1 Classification, Nomenclature and Origin......Page 130
6.1.2 Traditional and Current Breeding Objectives......Page 131
6.2.1 A Brief History of Cicer Mapping Efforts......Page 132
6.2.2 First-Generation Maps......Page 133
6.2.3 Second-Generation Maps......Page 134
6.3 Gene Mapping and QTL Detection for Disease Resistance......Page 136
References......Page 139
7.1.2 Botanical Descriptions......Page 143
7.1.3 Economic Importance......Page 144
7.1.5 Germplasm Screening......Page 145
7.2 Construction of Genetic Maps......Page 146
7.3 Gene Mapping......Page 147
7.4 QTL Detection......Page 148
7.6 New Tools and Future Directions......Page 149
References......Page 151
8.1 Introduction......Page 153
8.1.1 Classification, Nomenclature, and Origin......Page 154
8.1.2 Yield Constraints and Breeding Objectives in Pigeonpea......Page 155
8.3 Employment of Molecular Markers......Page 157
8.3.1 First-Generation DNA Markers......Page 158
8.4 Pigeonpea Transformation......Page 160
8.6 Future Outlook: Comparative Mapping and Genomics in Legumes......Page 161
References......Page 162
9.1 Brief History of Crop......Page 166
9.2 Botanical Description......Page 167
9.4 Economic Importance......Page 169
9.6 Quinoa Molecular Marker Studies: Introduction......Page 170
9.6.3 Expressed Sequence Tags and Single Nucleotide Polymorphism Markers......Page 171
9.6.4 Quinoa Bacterial Artificial Chromosome Library......Page 174
9.6.5 Cytogenetics......Page 175
References......Page 176
10.1.1 The Crop Bambara Groundnut......Page 178
10.1.2 The Plant......Page 179
10.1.4 Distribution and Domestication......Page 180
10.2.1 Genetic Diversity in Vigna......Page 182
10.3.1 Choice of Parents......Page 183
10.3.3 F[sub(1)] and F[sub(2)] Progenies of Intraspecific Cross......Page 184
10.3.5 Types of Populations and Their Specific Applications......Page 185
10.3.6 Genetic Linkage Map of Bambara Groundnut......Page 187
10.4 QTL Mapping in Bambara Groundnut......Page 188
10.5.3 Oligonucleotide DNA Microarrays......Page 189
References......Page 190
11.1.2 Morphology and Taxonomy......Page 193
11.1.3 Karyotype......Page 196
11.1.5 Breeding Objectives......Page 197
11.1.6 Classical Breeding Achievements......Page 198
11.2.2 Second-Generation Maps......Page 199
11.2.3 Comparative Mapping......Page 200
11.3 Detection of QTLs......Page 201
11.3.1 QTLs Associated with Resistance......Page 207
11.3.2 QTLs Associated with Sugar Yield and Content......Page 209
11.4 Gene Mapping, Marker-Assisted Breeding and Map-Based Cloning......Page 214
11.4.1 Advanced Works......Page 216
11.5 Future Scope of Works......Page 217
References......Page 218
12.1.1 History, Taxonomy and Distribution......Page 222
12.1.2 Potato Breeding......Page 225
12.2 First-Generation Genetic Linkage Maps of Potato......Page 228
12.3.1 Mapping of Loci Associated with Disease Resistance......Page 233
12.3.2 Mapping of Loci Affecting Tuber Characteristics......Page 237
12.4 Second-Generation Maps: Linkage and QTL Analysis in Tetraploid Potato......Page 241
12.6 Map-Based Gene Cloning in Potato......Page 243
12.8 Association Genetics......Page 245
12.10 MAS in Potato Breeding......Page 247
References......Page 248
13.1.1 Importance of Sweetpotato......Page 254
13.1.2 Ipomoea Series Batatas (Convolvulaceae): Phylogenetic Relationships......Page 255
13.2 DNA Markers......Page 256
13.3 Sweetpotato Genetic Maps......Page 257
13.4 Gene Identification and Functional Genomics......Page 259
13.6 Conclusions......Page 260
References......Page 261
14.1.2 Botanical Descriptors......Page 265
14.1.5 Classical Breeding Achievements......Page 266
14.1.6 Limitations of Classical Breeding and Utility of Molecular Mapping......Page 267
14.2.1 First-Generation Maps in Cassava......Page 268
14.2.2 Second-Generation Maps......Page 269
14.3 Gene Mapping......Page 275
14.4 Quantitative Trait Loci Analysis......Page 276
14.5 Marker-Assisted Breeding......Page 278
14.6 Map-Based Cloning......Page 280
14.7.1 Tools: ESTs and Microarrays......Page 281
References......Page 282
15.1.2 Botanical Description......Page 286
15.1.3 Economic Importance......Page 287
15.1.4 Breeding Objectives......Page 288
15.1.6 Utility of Molecular Mapping......Page 290
15.2.1 Mapping of D. rotundata Genome and Detection of QTLs for YMV Resistance......Page 292
15.2.2 Mapping of D. alata Genome and Detection of QTLs for Anthracnose Resistance......Page 298
15.3.1 Molecular Markers for YMV Resistance......Page 304
15.3.2 Molecular Markers for YAD Resistance......Page 305
15.4 Future Scope of Works......Page 307
References......Page 308
B......Page 312
C......Page 313
E......Page 314
G......Page 315
L......Page 316
O......Page 317
P......Page 318
S......Page 319
V......Page 320
Z......Page 321