Protein-Protein Interactions - Computational, Experimental Tools

00 preface_ Protein-Protein Interactions – Computational and Experimental Tools......Page 1
Part 1 Computational Approaches......Page 13
01 Computational Methods for Prediction of
Protein-Protein Interaction Sites......Page 15
02 Advances in Human-Protein Interaction -
Interactive and Immersive Molecular Simulations......Page 39
03 Protein Interactome and Its
Application to Protein Function Prediction......Page 77
04 Integrative Approach for Detection
of Functional Modules from Protein-Protein
Interaction Networks......Page 109
05 Mining Protein Interaction Groups......Page 125
06 Prediction of Combinatorial
Protein-Protein Interaction from Expression
Data Based on Conditional Probability......Page 143
07 Inferring Protein-Protein Interactions (PPIs)
Based on Computational Methods......Page 159
08 Slow Protein Conformational Change,
Allostery and Network Dynamics......Page 181
09 Prediction of Protein Interaction
Sites Using Mimotope Analysis......Page 201
10 Structural Bioinformatics of Proteins:
Predicting the Tertiary and Quaternary
Structure of Proteins from Sequence......Page 219
11 Computational Approaches to
Predict Protein Interaction......Page 243
12 G-Protein Coupled Receptors:
Experimental and Computational Approaches......Page 259
13 Computational Approaches
to Elucidating Transient
Protein-Protein Interactions,
Predicting Receptor-Ligand Pairings......Page 271
14 Finding Protein Complexes via
Fuzzy Learning Vector Quantization Algorithm......Page 285
Part 2 Experimental Approaches......Page 297
15 In Vivo Imaging of Protein-Protein Interactions......Page 299
16 NMR Investigations on Ruggedness of Native
State Energy Landscape in Folded Proteins......Page 317
17 Conformational and Disorder to Order
Transitions in Proteins: Structure / Function
Correlation in Apolipoproteins......Page 343
18 Protein-Protein Interactions in Salt Solutions......Page 371
Part 3 Others......Page 389
19 Computational Tools and Databases
for the Study and Characterization
of Protein Interactions......Page 391
20 Protein-Protein Interaction Networks:
Structures, Evolution, and
Application to Drug Design......Page 417
21 A Survey on Evolutionary Analysis
in PPI Networks......Page 439
22 Scalable, Integrative Analysis
and Visualization of Protein Interactions......Page 469