Pattern Recognition in Bioinformatics: Second IAPR International Workshop, PRIB 2007, Singapore, October 1-2, 2007. Proceedings

Front Matter....Pages -
Automated Methods of Predicting the Function of Biological Sequences Using GO and Rough Set....Pages 1-10
C-Based Design Methodology for FPGA Implementation of ClustalW MSA....Pages 11-18
A Two-Phase ANN Method for Genome-Wide Detection of Hormone Response Elements....Pages 19-29
An Expert Knowledge-Guided Mutation Operator for Genome-Wide Genetic Analysis Using Genetic Programming....Pages 30-40
cDNA-Derived Amino Acid Sequence from Rat Brain A 2a R Possesses Conserved Motifs PMNYM of  TM 5 Domain, Which May Be Involved in Dimerization of A 2a R....Pages 41-50
Strong GC and AT Skew Correlation in Chicken Genome....Pages 51-59
Comparative Analysis of a Hierarchical Bayesian Method for Quantitative Trait Loci Analysis for the Arabidopsis Thaliana....Pages 60-70
Using Decision Templates to Predict Subcellular Localization of Protein....Pages 71-83
Generalized Schemata Theorem Incorporating Twin Removal for Protein Structure Prediction....Pages 84-97
Using Fuzzy Support Vector Machine Network to Predict Low Homology Protein Structural Classes....Pages 98-107
SVM-BetaPred: Prediction of Right-Handed ß-Helix Fold from Protein Sequence Using SVM....Pages 108-119
Protein Fold Recognition Based Upon the Amino Acid Occurrence....Pages 120-131
Using Efficient RBF Network to Identify Interface Residues Based on PSSM Profiles and Biochemical Properties....Pages 132-141
Dynamic Outlier Exclusion Training Algorithm for Sequence Based Predictions in Proteins Using Neural Network....Pages 142-147
Bioinformatics on β -Barrel Membrane Proteins: Sequence and Structural Analysis, Discrimination and Prediction....Pages 148-157
Estimation of Evolutionary Average Hydrophobicity Profile from a Family of Protein Sequences....Pages 158-165
APMA Database for Affymetrix Target Sequences Mapping, Quality Assessment and Expression Data Mining....Pages 166-177
Ensemble of Dissimilarity Based Classifiers for Cancerous Samples Classification....Pages 178-188
Gene Expression Analysis of Leukemia Samples Using Visual Interpretation of Small Ensembles: A Case Study....Pages 189-197
Ant-MST: An Ant-Based Minimum Spanning Tree for Gene Expression Data Clustering....Pages 198-205
Integrating Gene Expression Data from Microarrays Using the Self-Organising Map and the Gene Ontology....Pages 206-217
Order Preserving Clustering by Finding Frequent Orders in Gene Expression Data....Pages 218-229
Correlation-Based Relevancy and Redundancy Measures for Efficient Gene Selection....Pages 230-241
SVM-RFE with Relevancy and Redundancy Criteria for Gene Selection....Pages 242-252
 In Silico Expression Profiles of Human Endogenous Retroviruses....Pages 253-263
A Framework for Path Analysis in Gene Regulatory Networks....Pages 264-273
Transcriptional Gene Regulatory Network Reconstruction Through Cross Platform Gene Network Fusion....Pages 274-285
Reconstruction of Protein-Protein Interaction Pathways by Mining Subject-Verb-Objects Intermediates....Pages 286-299
Validation of Gene Regulatory Networks from Protein-Protein Interaction Data: Application to Cell-Cycle Regulation....Pages 300-310
Rough Sets and Fuzzy Sets Theory Applied to the Sequential Medical Diagnosis....Pages 311-322
 In silico Identification of Putative Drug Targets in Pseudomonas aeruginosa Through Metabolic Pathway Analysis....Pages 323-336
Understanding Prediction Systems for HLA-Binding Peptides and T-Cell Epitope Identification....Pages 337-348
Predicting Binding Peptides with Simultaneous Optimization of Entropy and Evolutionary Distance....Pages 349-355
3D Automated Nuclear Morphometric Analysis Using Active Meshes....Pages 356-367
Time-Frequency Method Based Activation Detection in Functional MRI Time-Series....Pages 368-377
High Performance Classification of Two Imagery Tasks in the Cue-Based Brain Computer Interface....Pages 378-390
Human Brain Anatomical Connectivity Analysis Using Sequential Sampling and Resampling....Pages 391-400
Classification of CT Brain Images of Head Trauma....Pages 401-408
Back Matter....Pages -