Pattern Recognition in Bioinformatics: 8th IAPR International Conference, PRIB 2013, Nice, France, June 17-20, 2013. Proceedings

Front Matter....Pages -
A Fast Agglomerative Community Detection Method for Protein Complex Discovery in Protein Interaction Networks....Pages 1-12
Inferring Gene Regulatory Networks from Time-Series Expressions Using Random Forests Ensemble....Pages 13-22
Local Topological Signatures for Network-Based Prediction of Biological Function....Pages 23-34
Mutational Genomics for Cancer Pathway Discovery....Pages 35-46
Outlier Gene Set Analysis Combined with Top Scoring Pair Provides Robust Biomarkers of Pathway Activity....Pages 47-58
Restricted Neighborhood Search Clustering Revisited: An Evolutionary Computation Perspective....Pages 59-68
Class Dependent Feature Weighting and K-Nearest Neighbor Classification....Pages 69-78
Simultaneous Sample and Gene Selection Using T-score and Approximate Support Vectors....Pages 79-90
Versatile Sparse Matrix Factorization and Its Applications in High-Dimensional Biological Data Analysis....Pages 91-101
A Local Structural Prediction Algorithm for RNA Triple Helix Structure....Pages 102-113
Combining Protein Fragment Feature-Based Resampling and Local Optimisation....Pages 114-125
Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation....Pages 126-137
Identifying Informative Genes for Prediction of Breast Cancer Subtypes....Pages 138-148
Predicting Therapeutic Targets with Integration of Heterogeneous Data Sources....Pages 149-158
Using Predictive Models to Engineer Biology: A Case Study in Codon Optimization....Pages 159-171
Active Learning for Protein Function Prediction in Protein-Protein Interaction Networks....Pages 172-183
Conditional Random Fields for Protein Function Prediction....Pages 184-195
Enhancing Protein Fold Prediction Accuracy Using Evolutionary and Structural Features....Pages 196-207
Exploring Potential Discriminatory Information Embedded in PSSM to Enhance Protein Structural Class Prediction Accuracy....Pages 208-219
Inferring the Association Network from p53 Sequence Alignment Using Granular Evaluations....Pages 220-230
Prediction of Non-genotoxic Hepatocarcinogenicity Using Chemical-Protein Interactions....Pages 231-241
A Structure Based Algorithm for Improving Motifs Prediction....Pages 242-252
A Workflow for the Prediction of the Effects of Residue Substitution on Protein Stability....Pages 253-264
Estimating Viral Haplotypes in a Population Using k-mer Counting....Pages 265-276
Fast Computation of Entropic Profiles for the Detection of Conservation in Genomes....Pages 277-288
Back Matter....Pages -