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John Wiley & Sons, Ltd, 2011. — 511 p. Presenting cutting-edge
research and development within multiscale modeling techniques
and frameworks, systematically describes the background,
principles and methods within this exciting new &
interdisciplinary field. The author's approach emphasizes the
principles and methods of atomistic simulation and its
transition to the nano and sub-micron scale of a continuum,
which is technically important for nanotechnology and
biotechnology. He also pays close attention to multiscale
analysis across the micro/meso/macroscopy of a continuum, which
has a broad scope of applications encompassing different
disciplines and practices, and is an essential extension of
mesomechanics. Of equal interest to engineers, scientists,
academics and students, is a multidisciplinary text relevant to
those working in the areas of materials science, solid and
computational mechanics, bioengineering and biomaterials, and
aerospace, automotive, civil, and environmental
engineering.
- Provides a deep understanding of multiscale analysis and its
implementation
- Shows in detail how multiscale models can be developed from
practical problems and how to use the multiscale methods and
software to carry out simulations
- Discusses two interlinked categories of multiscale analysis;
analysis spanning from the atomistic to the micro-continuum
scales, and analysis across the micro/meso/macro scale of
continuum.
Table of Contents
About the Author.
Series Preface.
Preface.
Abbreviations.
1 Introduction.
1.1 Material Properties Based on Hierarchy of Material
Structure.
1.2 Overview of Multiscale Analysis.
1.3 Framework of Multiscale Analysis Covering a Large Range of
Spatial Scales.
1.4 Examples in Formulating Multiscale Models from
Practice.
1.5 Concluding Remarks.
References.
2 Basics of Atomistic Simulation.
2.1 The Role of Atomistic Simulation.
2.2 Interatomic Force and Potential Function.
2.3 Pair Potential.
2.4 Numerical Algorithms for Integration and Error
Estimation.
2.5 Geometric Model Development of Atomistic System.
2.6 Boundary Conditions.
2.7 Statistical Ensembles.
2.8 Energy Minimization for Preprocessing and Statistical
Mechanics Data Analyses.
2.9 Statistical Simulation Using Monte Carlo Methods.
2.10 Concluding Remarks.
References.
3 Applications of Atomistic Simulation in Ceramics and
Metals.
Part 3.1 Applications in Ceramics and Materials with Ionic and
Covalent Bonds.
3.1 Covalent and Ionic Potentials and Atomistic Simulation for
Ceramics.
3.2 Born Solid Model for Ionic-bonding Materials.
3.3 Shell Model.
3.4 Determination of Parameters of Short-distance Potential for
Oxides.
3.5 Applications in Ceramics: Defect Structure in Scandium
Doped Ceria Using Static Lattice Calculation.
3.6 Applications in Ceramics: Combined Study of Atomistic
Simulation with XRD for Nonstoichiometry Mechanisms in Y3Al5O12
(YAG) Garnets.
3.7 Applications in Ceramics: Conductivity of the YSZ Oxide
Fuel Electrolyte and Domain Switching of Ferroelectric Ceramics
Using MD.
3.8 Tersoff and Brenner Potentials for Covalent
Materials.
3.9 The Atomistic Stress and Atomistic-based Stress
Measure.
Part 3.2 Applications in Metallic Materials and Alloys.
3.10 Metallic Potentials and Atomistic Simulation for
Metals.
3.11 Embedded Atom Methods EAM and MEAM.
3.12 Constructing Binary and High Order Potentials from
Monoatomic Potentials.
3.13 Application Examples of Metals: MD Simulation Reveals
Yield Mechanism of Metallic Nanowires.
3.14 Collecting Data of Atomistic Potentials from the Internet
Based on a Specific Technical Requirement.
Appendix 3.A Potential Tables for Oxides and Thin-Film Coating
Layers.
References.
4 Quantum Mechanics and Its Energy Linkage with Atomistic
Analysis.
4.1 Determination of Uranium Dioxide Atomistic Potential and
the Significance of QM.
4.2 Some Basic Concepts of QM.
4.3 Postulates of QM.
4.4 The Steady State Schr€odinger Equation of a Single
Particle.
4.5 Example Solution: Square Potential Well with Infinite
Depth.
4.6 Schrodinger Equation of Multi-body Systems and
Characteristics of its Eigenvalues and Ground State
Energy.
4.7 Three Basic Solution Methods for Multi-body Problems in
QM.
4.8 Tight Binding Method.
4.9 Hartree-Fock (HF) Methods.
4.10 Electronic Density Functional Theory (DFT).
4.11 Brief Introduction on Developing Interatomic Potentials by
DFT Calculations.
4.12 Concluding Remarks.
Appendix 4.A Solution to Isolated Hydrogen Atom.
References.
5 Concurrent Multiscale Analysis by Generalized Particle
Dynamics Methods.
5.1 Introduction.
5.2 The Geometric Model of the GP Method.
5.3 Developing Natural Boundaries Between Domains of Different
Scales.
5.4 Verification of Seamless Transition via 1D Model.
5.5 An Inverse Mapping Method for Dynamics Analysis of
Generalized Particles.
5.6 Applications of GP Method.
5.7 Validation by Comparison of Dislocation Initiation and
Evolution Predicted by MD and GP.
5.8 Validation by Comparison of Slip Patterns Predicted by MD
and GP.
5.9 Summary and Discussions.
5.10 States of Art of Concurrent Multiscale Analysis.
5.11 Concluding Remarks.
References.
6 Quasicontinuum Concurrent and Semi-analytical Hierarchical
Multiscale Methods Across Atoms/Continuum.
6.1 Introduction.
Part 6.1 Basic Energy Principle and Numerical Solution
Techniques in Solid Mechanics.
6.2 Principle of Minimum Potential Energy of Solids and
Structures.
6.3 Essential Points of Finite Element Methods.
Part 6.2 Quasicontinuum (QC) Concurrent Method of Multiscale
Analysis.
6.4 The Idea and Features of the QC Method.
6.5 Fully Non-localized QC Method.
6.6 Applications of the QC Method.
6.7 Short Discussion about the QC Method.
Part 6.3 Analytical and Semi-analytical Multiscale Methods
Across Atomic/Continuum Scales.
6.8 More Discussions about Deformation Gradient and the
Cauchy-Born Rule.
6.9 Analytical/Semi-analytical Methods Across Atom/Continuum
Scales Based on the Cauchy-Born Rule.
6.10 Atomistic-based Continuum Model of Hydrogen Storage with
Carbon Nanotubes.
6.11 Atomistic-based Model for Mechanical, Electrical and
Thermal Properties of Nanotubes.
6.12 A Proof of 3D Inverse Mapping Rule of the GP Method.
6.13 Concluding Remarks.
References.
7 Further Introduction to Concurrent Multiscale Methods.
7.1 General Feature in Geometry of Concurrent Multiscale
Modeling.
7.2 Physical Features of Concurrent Multiscale Models.
7.3 MAAD Method for Analysis Across ab initio, Atomic and
Macroscopic Scales.
7.4 Force-based Formulation of Concurrent Multiscale
Modeling.
7.5 Coupled Atom Discrete Dislocation Dynamics (CADD)
Multiscale Method.
7.6 1D Model for a Multiscale Dynamic Analysis.
7.7 Bridging Domains Method.
7.8 1D Benchmark Tests of Interface Compatibility for DC
Methods.
7.9 Systematic Performance Benchmark of Most DC
Atomistic/Continuum Coupling Methods.
7.10 The Embedded Statistical Coupling Method (ESCM).
References.
8 Hierarchical Multiscale Methods for Plasticity.
8.1 A Methodology of Hierarchical Multiscale Analysis Across
Micro/meso/macroscopic Scales and Information Transformation
Between These Scales.
8.2 Quantitative Meso-macro Bridging Based on Self-consistent
Schemes.
8.3 Basics of Continuum Plasticity Theory.
8.4 Internal Variable Theory, Back Stress and Elastoplastic
Constitutive Equations.
8.5 Quantitative Micro-meso Bridging by Developing Meso-cell
Constitutive Equations Based on Microscopic Analysis.
8.6 Determining Size Effect on Yield Stress and Kinematic
Hardening Through Dislocation Analysis.
8.7 Numerical Methods to Link Plastic Strains at the Mesoscopic
and Macroscopic Scales.
8.8 Experimental Study on Layer-thickness Effects on Cyclic
Creep (Ratcheting).
8.9 Numerical Results and Comparison Between Experiments and
Multiscale Simulation.
8.10 Findings in Microscopic Scale by Multiscale
Analysis.
8.11 Summary and Conclusions.
Appendix 8.A Constitutive Equations and Expressions of
Parameters.
Appendix 8.B Derivation of Equation (8.12e) and Matrix
Elements.
References.
9 Topics in Materials Design, Temporal Multiscale Problems and
Bio-materials.
Part 9.1 Materials Design.
9.1 Multiscale Modeling in Materials Design.
Part 9.2 Temporal Multiscale Problems.
9.2 Introduction to Temporal Multiscale Problems.
9.3 Concepts of Infrequent Events.
9.4 Minimum Energy Path (MEP) and Transition State Theory in
Atomistic Simulation.
9.5 Applications and Impacts of NEB Methods.
Part 9.3 Multiscale Analysis of Protein Materials and Medical
Implant Problems.
9.6 Multiscale Analysis of Protein Materials.
9.7 Multiscale Analysis of Medical Implants.
9.8 Concluding Remarks.
Appendix 9A Derivation of Governing Equation (9.11) for
Implicit Relationship of Stress, Strain Rate, Temperature in
Terms of Activation Energy and Activation Volume.
References.
10 Simulation Schemes, Softwares, Lab Practice and
Applications.
Part 10.1 Basics of Computer Simulations.
10.1 Basic Knowledge of UNIX System and Shell Commands.
10.2 A Simple MD Program.
10.3 Static Lattice Calculations Using GULP.
10.4 Introduction of Visualization Tools and Gnuplot.
10.5 Running an Atomistic Simulation Using a Public MD Software
DL_POLY.
10.6 Nve and npt Ensemble in MD Simulation.
Part 10.2: Simulation Applications in Metals and Ceramics by
MD.
10.7 Non-equilibrium MD Simulation of One-phase Model Under
External Shearing (1).
10.8 Non-equilibrium MD Simulation of a One-phase Model Under
External Shearing (2).
10.9 Non-equilibrium MD Simulation of a Two-phase Model Under
External Shearing.
Part 10.3: Atomistic Simulation for Protein-Water System and
Brief Introduction of Large-scale Atomic/Molecular System
(LAMMPS) and the GP Simulation.
10.10 Using NAMD Software for Biological Atomistic
Simulation.
10.11 Stretching of a Protein Module (1): System Building and
Equilibration with VMD/NAMD.
10.12 Stretching of a Protein Module (2): Non-equilibrium MD
Simulation with NAMD.
10.13 Brief Introduction to LAMMPS.
10.14 Multiscale Simulation by Generalized Particle (GP)
Dynamics Method.
Appendix 10.A Code Installation Guide.
Prerequisites.
10.A.1 Introduction.
10.A.2 Using the KNOPPIX CD to Install the GNU/Linux
System.
10.A.3 ssh and scp.
10.A.4 Fortran and C Compiler.
10.A.5 Visual Molecular Dynamics (VMD).
10.A.6 Installation of AtomEye.
Appendix 10.B Brief Introduction to Fortran 90.
10.B.1 Program Structure, Write to Terminal and Write to
File.
10.B.2 Do Cycle, Formatted Output.
10.B.3 Arrays and Allocation.
10.B.4 IF THEN ELSE.
Appendix 10.C Brief Introduction to VIM.
10.C.1 Introduction.
10.C.2 Simple Commands.
Appendix 10.D Basic Knowledge of Numerical Algorithm for Force
Calculation.
10.D.1 Force Calculation in Atomistic Simulation.
Appendix 10.E Basic Knowledge of Parallel Numerical
Algorithm.
10.E.1 General Information.
10.E.2 Atom Decomposition.
10.E.3 Force Decomposition.
10.E.4 Domain Decomposition.
Appendix 10.F Supplemental Materials and Software for Geometric
Model Development in Atomistic Simulation.
10.F.1 Model Development for Model Coordinates Coincident with
Main Crystal Axes.
10.F.2 Model Development for Model Coordinates not Coincident
with Crystal Axes.
References.
Postface.
Index.