Land Plants - Trees,

Content: Front Cover
 Advances in Botanical Research
 Series Editors
 Advances in Botanical Research Land Plants --
Trees
 Copyright
 Contents
 Contributors
 Preface
 Whole Genome Sequencing of Fruit Tree Species
 1. Introduction
 2. Fruit Tree Genomes Sequenced to Date
 2.1 The First Fruit-Bearing Genome to be Sequenced: Grapevine (Vitis vinifera)
 2.2 An Insight into Recent Whole Genome Duplication: Apple (Malus×domestica)
 2.3 Pear (Pyrus spp.) Has Fewer Repeated Elements than Apple
 2.4 The Sequence of a Giant Monocotyledon: Date Palm (Phoenix dactylifera) 2.5 The First Genome Sequence of a Transgenic Tree Crop: Papaya (Carica papaya)2.6 A Very High Quality Fruit Genome Sequence: Peach (Prunus persica)
 2.7 Genome Sequencing of a Species Rich in Vitamin C: Kiwifruit (Actinidia chinensis)
 2.8 Decoding the Complex Subgenomes of a Triploid Crop: Banana (Musa acuminata)
 2.9 On the Origin of Citrus Fruit: Clementine Mandarin (Citrus×Clementina)
 2.10 Jujube (Ziziphus jujuba)
 2.11 Mulberry (Morus notabilis)
 2.12 Sweet Orange (Citrus sinensis)
 2.13 Chinese Plum (Prunus mume)
 2.14 Macadamia Nut (Macadamia integrifolia) 2.15 Pod Colour Fine Mapping in Cocoa (Theobroma cacao)2.16 Coffee (Coffea canephora) and the Evolution of Genes Controlling Caffeine Biosynthesis
 2.17 The Genome Sequence of a Crassulacean Monocotyledon: Pineapple (Ananas comosus)
 2.18 Blueberry (Vaccinium corymbosum)
 2.19 Hazelnut (Corylus avellana)
 2.20 Raspberry (Rubus spp.)
 2.21 Mango (Mangifera indica)
 2.22 Summary of Genome Assemblies in Fruit Trees
 3. Fruit Trees Gene Expansions and Genome Evolution
 3.1 Gene Families Expansions in Fruit Trees
 3.2 Whole Genome Replications 4. Applications of Whole Genome Sequence and Genome-Wide Genotyping Technologies for Breeding4.1 Commonly Used Marker Technologies
 4.1.1 Simple Sequence Repeats
 4.1.2 Single Nucleotide Polymorphism Arrays
 4.1.3 Genotyping-by-Sequencing
 4.2 Utilization of Genome-Wide Markers for Fruit Tree Breeding
 5. The Future of Fruit Tree Genomics
 Acknowledgements
 References
 Forest Tree Genomics: Review of Progress
 1. Introduction
 2. Why Research Forest Tree Genomics?
 2.1 Species Diversity, Ecological and Economic Importance
 2.2 Unique Features of Forest Trees 2.3 Contemporary Issues and Emerging Challenges3. Gene Discovery and Derived Genomic Resources
 4. Genome Analysis and Evolution
 4.1 Genome Sequencing and Assembly
 4.1.1 Populus
 4.1.2 Eucalyptus
 4.1.3 Conifers
 4.2 Genome Evolution in Hardwood and Conifer Trees
 4.2.1 Transposable Elements
 4.2.2 Gene Content
 4.2.3 Retention of Tandem Duplications versus WGD in Populus and Eucalyptus
 4.2.4 Gene Structure
 5. Gene Expression and Transcriptome Profiling
 5.1 Large-Scale RNA Transcript Profiling Methods
 5.2 Insights into Biological Processes