High Performance Computing Systems and Applications

High Performance Computing in North America....Pages 3-3
Enabling Chemistry Applications with High Performance Computing....Pages 5-5
High Performance Programming for Computational Scientists....Pages 7-14
Computational Cognition and the Age of Supercomputing: Using High-Performance Computing and Usenet to Model Memory, Meaning and the Mind....Pages 15-15
Web-Centric Supercomputing....Pages 17-17
Sharing and Security Policies for HPC and HPN....Pages 21-30
Toward a Model of Models: Part I....Pages 33-38
Toward a Model of Models: Part II....Pages 39-43
Prospects for a Distributed Research Network: Case Studies of Means, Mechanisms and Issues....Pages 45-45
A Testing Strategy for Nondeterministic Message Passing Programs....Pages 49-63
Roots: An Object-Oriented Active Message Library....Pages 65-78
Hardware Performance and Communication Models of a Distributed Memory Parallel Computer System: A Case Study....Pages 79-92
Applications of High Performance Computing in Vaccine Design....Pages 95-96
Modelling Molecules in Intense Laser Fields - Numerical Methods for an IBM-SP2 Parallel Computer Environment....Pages 97-97
Molecular Modeling of the Interaction of Neurotrophins with the P75 NTR Common Neurotrophin Receptor....Pages 99-113
Large Scale Molecular Dynamics Simulation Using MD-Engine....Pages 115-116
Parallel Computational Strategies for Viscous Hydrodynamics with Applications to Microfluidics....Pages 117-117
Graph Algorithms on the Linear Array with a Reconfigurable Optical Bus....Pages 121-136
Communication Latency Hiding in Reconfigurable Message-Passing Environments: Quantitative Studies....Pages 137-152
Parallel Processing of the Evolving Tree Transformation System....Pages 153-170
Computer-Based Analysis of Completely Sequenced Bacterial Genomes Reveals a Link Between Nucleotide Bias and Amino Acid Composition....Pages 171-180
Virtual Enhancement of Combinatorial Libraries....Pages 181-181
Bluejay: A Browser for Linear Units in Java....Pages 183-194
The “Structured-Universe Approach” for Irregular and Dynamic Spatial Structures....Pages 197-214
World Distribution Protocol for Support of Scalable General Purpose Distributed Virtual Environments....Pages 215-220
A Programming System for Parallel Execution of Fortran Subprograms in Distributed Environment....Pages 221-236
Condensed Graphs: A Multi-level, Parallel, Abstract Machine....Pages 237-252
Object-Oriented Distributed and Parallel I/O Streams....Pages 253-268
Parallelization of an Airline Flight-Scheduling Module on a Sci-Coupled NUMA Shared Memory Cluster....Pages 269-284
Darwinian Evolution at RPN....Pages 287-287
High-Resolution Weather Forecasting: A Teraflop Sustained on RISC/cache or Vector Processors....Pages 289-299
High-Performance Modelling for the Mesoscale Alpine Programme (MAP) Field Experiment....Pages 301-312
Climate Modelling at the University of Victoria....Pages 313-313
Air Quality Prediction System....Pages 315-316
On the Use of Coupled Atmospheric and Hydrologic Models at Regional Scale....Pages 317-322
A Note on Coarse Grained Parallel Integer Sorting....Pages 325-332
Fast and Scalable Parallel Algorithms for Matrix Chain Product and Matrix Powers on Optical Buses....Pages 333-348
An Efficient Transposition Algorithm for Distributed Memory Computers....Pages 349-370
Large Imagery Data Structuring Using Hierarchical Data Format for Parallel Computing and Visualization....Pages 371-386
Cache Performance on Parallel Hash Join Algorithms....Pages 387-402
Easy-Par: A Hybrid Environment Based on Message-Passing and Distributed Shared Memory....Pages 403-411
A Preliminary DSM Speedup Comparison: JIAJIA X Nautilus....Pages 413-428
A Parallel Direct 3D Elliptic Solver....Pages 429-442
Reading Words Aloud: An Example of Retrieval from Semantic Memory....Pages 443-454
Computing Numerical Distribution Functions in Econometrics....Pages 455-471
High-Performance Computing for Computer-Aided Diagnosis of Breast Cancer....Pages 473-473
Bioinformatics Challenges Facing Medical Research Professionals and the Tools to Face Them....Pages 475-475
Monte Carlo Simulations of Polymers in Solution....Pages 479-479
Monte Carlo Studies of the Self-Assembly of Amphiphilic Molecules....Pages 481-495
Modeling Geometrical Heterogeneity in Biofilms....Pages 497-512
Experiences Using High-Level Programming for Parallel Cellular Computation....Pages 516-528
A Parallel Analytical Solution of a Stochastic Combat Model....Pages 529-539
Parallel Finite Element Simulation of 3D Mold-Filling Problems....Pages 541-556
Performance Analysis of Tape Libraries for Supercomputing Environments....Pages 559-574
Network Parallel Computing for SOM Neural Networks....Pages 575-586
Relaxation Phenomena of Ultra-Thin Magnetic Films....Pages 587-599