Frontiers of Computational Science: Proceedings of the International Symposium on Frontiers of Computational Science 2005

Front Matter....Pages I-XXV
Front Matter....Pages 1-1
Computational Methods Combining Large Eddy Simulation with Approximate Wall-Layer Models for Predicting Separated Turbulent Near-Wall Flows....Pages 3-14
Numerical Experimentation: A Third Way to Study Nature....Pages 15-30
Recent Computational Developments in Quantum Conductance and Field Emission of Carbon Nanotubes....Pages 31-35
Energy Landscapes of Protein Self-Assembly: Lessons from Native Topology-Based Models....Pages 37-51
A Brief Introduction to Krylov Space Methods for Solving Linear Systems....Pages 53-62
Recent Developments in DNS and Modeling of Rotating Wall-Turbulent Shear Flows with Heat Transfer....Pages 63-73
Contribution of Computational Biology and Structural Genomics to Understand Genome and Transcriptome....Pages 75-80
Front Matter....Pages 82-82
Achromatic and Chromatic Visual Information Processing and Discrete Wavelets....Pages 83-89
On Decaying Two-Dimensional Turbulence in a Circular Container....Pages 91-97
A Study Toward Improving Accuracy of Large Scale Industrial Turbulent Flow Computations....Pages 99-105
Direct Numerical Simulations of Turbulent Premixed Flames with Realistic Kinetic Mechanisms....Pages 107-113
Variational Monte Carlo Studies of Superconductivity in κ -BEDT-TTF Salts....Pages 115-118
Simulation for Measurements of Electric Properties of Surface Nanostructures....Pages 119-124
Ultra-Fast Dynamics in Nanocarbon Explored by TDDFT-MD Simulations....Pages 125-130
Heat Transport in Nanoscale Objects: Classical to Quantum....Pages 131-136
Aromaticity Driven Rupture of CN and CC Multiple Bonds....Pages 137-142
Protein Function Prediction in Proteomics Era....Pages 143-148
What We can Learn about Protein Folding from Recent Progress in Structure Prediction....Pages 149-155
Brownian Dynamics Approach to Protein Folding....Pages 157-163
A Fourth Type of Secondary Structure Breaker....Pages 165-170
Front Matter....Pages 82-82
Neighborhood Parallel Simulated Annealing....Pages 171-176
New Computing System Architecture for Simulation of Biological Signal Transduction Networks....Pages 177-180
Convergence Analysis of GMRES Methods for Least Squares Problems....Pages 181-187
A Numerical Method for Calculating the Green's Function Arising from Electronic Structure Theory....Pages 189-195
Front Matter....Pages 198-198
Direct Numerical Simulation of Turbulent Channel Flow Imposed with Spanwise Couette Flow....Pages 199-203
Reynolds-Number Dependence of Transport Barriers in Chaotic Mixing....Pages 205-208
On the Treatment of Long-range Electrostatic Interactions in Biomolecular Simulations....Pages 209-214
DNS of Turbulent Channel Flow Obstructed by Rectangular Ribs....Pages 215-220
Source Models of Gravity Waves in an F -plane Shallow Water System....Pages 221-225
Direct Numerical Simulation of Neutrally Stratified Ekman Boundary Layer....Pages 227-230
Application of the Renormalization Group Analysis to a Noisy Kuramoto–Sivashinsky Equation and its Numerical Simulation....Pages 231-234
Wavelet-Based Statistics in High-Resolution Direct Numerical Simulations of Three-Dimensional Homogeneous Isotropic Turbulence....Pages 235-238
Hydrophobic Hydration on Nanometer Length Scale....Pages 239-242
Ultra-Fast Genome Wide Simulation of Biological Signal Transduction Networks: Starpack....Pages 243-246
Molecular Dynamics Study on Interaction of C-Component Dislocation Loop and Edge Dislocation in α -Zirconium....Pages 247-251
Theoretical Analysis of Intramolecular Interaction....Pages 253-257
Effect of Nanoscale Structure of Solid Surface on Moving Droplet....Pages 259-263
Proximity Effect in NS Junctions in the Presence of Anderson Impurities....Pages 265-268
Wiedemann–Franz Law in Diffusive Normal Metal/p-Wave Superconductor Junctions....Pages 269-272
Nodal Structures of Wave Functions in Chaotic Billiards....Pages 273-276
Front Matter....Pages 198-198
Elongation of Water Residence Time at the Protein Interior in Aqueous Solution with Ectoine....Pages 277-281
Analytical Model for Protein Folding....Pages 283-287
Theoretical Research on Dynamics of the Genetic Toggle Switch....Pages 289-292
Non-Condon Theory for the Energy Gap Dependence of Electron Transfer Rate....Pages 293-297
Density Functional Molecular Orbital Calculations on Longer DNA–DNA and PNA–DNA Double Strands....Pages 299-303
A Parallel Computing Framework for Nonexperts of Computers: Easy Installation, Programming and Execution of Master–Worker Applications Using Spare Computing Power of PCs....Pages 305-308
Derivation of TIS for Search Performance Quantification on HC Method....Pages 309-312
Improvement of Search Performance of Genetic Algorithm Through Visualization of Search Process....Pages 313-316
A Proposal for Analysis of SD Evaluation Data by Using Clustering Method Focused on Data Distribution....Pages 317-320
Multiobjective Evolutionary RBF Networks and Its Application to Ensemble Learning....Pages 321-325
A New Concept of Cerebral Autoregulation Using Mathematical Expressions....Pages 327-331
Evolution Strategies on Desktop Grid Environment Using Scheduling Algorithms RR for Same Length Tasks....Pages 333-337
Solution of Black-Scholes Equation By Using RBF Approximation....Pages 339-343
Visualization of Differences on Two Subjects' Impression Words Based on Correlation of SD Data ....Pages 345-348
Evaluation of High Imaging Quality LCDs Which Features Moving Picture: Comparison using Stabilometers....Pages 349-352
Template Translation for Multilingual Disaster Information System....Pages 353-356
An Application of Double-Wayland Algorithm to Detect Anomalous Signals....Pages 357-361