Cyberinfrastructure Technologies and Applications

CYBERINFRASTRUCTURE TECHNOLOGIES AND APPLICATIONS......Page 3
NOTICE TO THE READER......Page 6
CONTENTS......Page 7
PREFACE......Page 9
ABSTRACT......Page 15
INTRODUCTION......Page 16
BACKGROUND......Page 17
New Algorithms......Page 21
Algorithm Description and Execution Environment......Page 23
Unified Approach for Different Memory Architectures......Page 24
Related Topics of High Importance......Page 25
REFERENCES......Page 28
ABSTRACT......Page 33
Research Background......Page 34
XPort......Page 38
Scientific Instrument Sharing......Page 39
Fuzzy Random Scheduling......Page 40
Performance Evaluation......Page 45
Summary......Page 50
REFERENCES......Page 51
ABSTRACT......Page 55
INTRODUCTION......Page 56
Challenges......Page 57
The Monitoring and Discovery Services......Page 58
Berkeley Database Information Index......Page 59
MODULAR INFORMATION PROVIDER (MIP)......Page 60
MIP Architecture and Components......Page 61
MIP Data Format......Page 64
An Example of MIP Deployment......Page 66
Case Study on Production Grid Infrastructures......Page 67
GISolve: A TeraGrid GIScience Gateway......Page 69
CONCLUSION......Page 71
REFERENCES......Page 72
ABSTRACT......Page 75
INTRODUCTION......Page 76
SYSTEM AND WORKLOAD MODEL......Page 77
GENETIC ALGORITHM......Page 78
Organizing Parallel Jobs......Page 80
Searching the Composition Table......Page 81
Employing a Heuristic to Balance the Performance......Page 84
EXPERIMENTAL STUDIES......Page 87
REFERENCES......Page 93
ABSTRACT......Page 95
INTRODUCTION......Page 96
VGE GRID INFRASTRUCTURE......Page 97
Architecture......Page 98
Service Hosting......Page 101
VIRTUALIZATION OF SCIENTIFIC APPLICATIONS......Page 102
Application Services......Page 103
QoS Management......Page 105
Service Invocation......Page 107
VIRTUALIZATION OF SCIENTIFIC DATA SOURCES......Page 108
Data Services......Page 109
Data Access Mechanisms......Page 110
Data Mediation......Page 111
Distributed Query Processing......Page 113
High-Level Client APIs......Page 114
Client-Side Access to VGE Services......Page 115
Grid Enabled Medical Simulation Services......Page 117
Integrated Biomedical Grid Infrastructure......Page 118
RELATED WORK......Page 120
REFERENCES......Page 122
INTRODUCTION......Page 127
ProActive Grid Scheduler......Page 128
Gridbus Broker Scheduling Infrastructure......Page 129
INTEGRATION CHALLENGES......Page 130
Proxies for ProActive Scheduling Layer......Page 131
ProActive Wrappers for Gridbus Broker......Page 132
Assembling the System......Page 133
C3D Application......Page 134
Launch the Application......Page 135
Impacts on ProActive......Page 136
CONCLUSION AND FUTURE WORK......Page 137
REFERENCES......Page 138
ABSTRACT......Page 141
BACKGROUND......Page 142
Design Motivation......Page 143
Architecture Design......Page 144
Components in CROWN......Page 145
Features Overview......Page 148
Overview......Page 149
Resource Management Using RLDS......Page 150
S-Club and RCT......Page 151
Overview......Page 154
Design and Implementation......Page 156
TESTBED AND APPLICATIONS OF CROWN......Page 161
REFERENCES......Page 162
ABSTRACT......Page 165
SIMDAT and the SIMDAT Pharma Grid......Page 166
DESIGN OF THE SEMANTICS-ENABLED SERVICE DISCOVERY FRAMEWORK IN THE SIMDAT PHARMA GRID......Page 169
OWL-DL-Based Bioinformatics Domain Ontology......Page 170
OWL-S-Based Service Annotation and the Annotation Toolkits......Page 173
Semantic Matchmaker Based on the Ontology Reasoning......Page 177
IXodus Biological Workflow......Page 178
Deployment of the Service Discovery Framework in the SIMDAT PharmaGrid......Page 180
Framework Usage: the IXodus Case Study......Page 181
Evaluation of the End User Experience......Page 183
Scalability Evaluation of the Semantic Broker......Page 184
RELATED WORK......Page 185
CONCLUSION......Page 187
REFERENCES......Page 188
INTRODUCTION......Page 193
Classic AI Planning......Page 194
Partial Order Planning......Page 195
H2POP Design......Page 196
H2POP Implementation......Page 200
A CASE STUDY OF H2POP......Page 202
Semi-Automatic Service Composition......Page 208
CONCLUSION......Page 209
REFERENCES......Page 210
ABSTRACT......Page 213
INTRODUCTION......Page 214
Languages and Tools for Service Orchestration......Page 216
Automatic Service Composition......Page 219
Mediation-Aided Service Composition......Page 220
Verification of Service Workflow......Page 222
Decentralized Execution of Workflow......Page 223
WS-Workflow: the Framework......Page 224
Key Technologies in WS-Workflow......Page 226
CONCLUSION......Page 231
REFERENCES......Page 232
Background......Page 237
Challenges......Page 238
VOMS......Page 240
GUMS......Page 241
DAC, MAC and RBAC......Page 242
PERMIS......Page 243
Resource and VO Policies......Page 244
Federal Cooperation and Sharing Mechanisms......Page 246
Current Trust Models......Page 247
Trust Modeling in CI Environment......Page 248
IMPLEMENTATION......Page 251
VOMC......Page 252
CONCLUSION......Page 253
REFERENCES......Page 254
INTRODUCTION......Page 257
INFORMATICS REQUIREMENTS FOR CYBER ENVIRONMENTS......Page 259
MEETING INFORMATICS REQUIREMENTS IN CYBERENVIRONMENTS......Page 261
Design Principles......Page 262
Software Technology Components......Page 264
Example Technologies Developed at NCSA......Page 267
Example Applications Supported by NCSA Technologies......Page 269
CONCLUSIONS AND FUTURE DIRECTIONS......Page 272
REFERENCES......Page 273
ABSTRACT......Page 277
From Metacomputing to Cyberinfrastructure......Page 278
New Collaborative e-Science through Virtual Organizations......Page 279
Emerging Technology for Pervasive Computing......Page 282
Metaschedulers and Resource Brokers......Page 283
Grid Filesystems and Data Aware Scheduling......Page 284
Workflows in Translational Biomedical Research......Page 285
CSF4 Framework for Plug-in Policies......Page 287
Function Plug-in......Page 290
Parallel Job Scheduling on the Grid......Page 293
Interface to Opal Based Web Services......Page 297
Vision Workflow Environment......Page 299
CASE STUDIES AND PERFORMANCE EVALUATION......Page 301
CONCLUSION AND FUTURE WORK......Page 302
REFERENCES......Page 303
INTRODUCTION......Page 309
Coupling Strategy......Page 311
Bridging Domain Multiscale Method......Page 320
Domain Decomposition......Page 321
Inter-Domain and Bridging Domain Communications......Page 322
One-Dimensional Examples......Page 325
Nano-Middleware......Page 326
Task Scheduling Advisor......Page 327
REFERENCES......Page 328
ABSTRACT......Page 331
Distributed Database Systems (DDB)......Page 332
Grid Technologies and Applications......Page 333
CYBERINFRASTRUCTURE (CI) FOR AGRICULTURAL DATA AND KNOWLEDGE SHARING IN CHINA......Page 336
System Architecture......Page 337
System Structure......Page 338
Technical Details......Page 339
Working Procedures......Page 341
REFERENCES......Page 343
INDEX......Page 345