Computational Science – ICCS 2006: 6th International Conference, Reading, UK, May 28-31, 2006. Proceedings, Part II

Front Matter....Pages -
Numerical Modeling of Plasma – Flow Interaction....Pages 1-9
Numerical Methods for Reacting Gas Flow Simulations....Pages 10-17
Reduced Flame Kinetics Via Rate-Controlled Constrained Equilibrium....Pages 18-25
Flow Patterns in the Vicinity of Triple Line Dynamics Arising from a Local Surface Tension Model....Pages 26-33
A Multilevel-Multigrid Approach to Multiscale Electromagnetic Simulation....Pages 34-40
Scalable Simulation of Electromagnetic Hybrid Codes....Pages 41-49
Numerical Modelling of Poroviscoelastic Grounds in the Time Domain Using a Parallel Approach....Pages 50-57
Numerical Modeling of Tidal Effects and Hydrodymanics in the Po River Estuary....Pages 58-65
Adaptive Mesh Refinement and Domain Decomposition: A Framework to Study Multi-physical and Multi-scale Phenomena. First Application to Reacting Gas Flows....Pages 66-69
Time Splitting and Grid Refinement Methods in the Lattice Boltzmann Framework for Solving a Reaction-Diffusion Process....Pages 70-77
Mesoscopic Simulations of Unsteady Shear-Thinning Flows....Pages 78-85
A Multiphysics Model of Capillary Growth and Remodeling....Pages 86-93
Liquid Computations and Large Simulations of the Mammalian Visual Cortex....Pages 94-101
Which Meshes Are Better Conditioned: Adaptive, Uniform, Locally Refined or Locally Adjusted?....Pages 102-105
Parallel Simulation of Three–Dimensional Bursting with MPI and OpenMP....Pages 106-113
Numerical Simulation of Phase Transformations in Shape Memory Alloy Thin Films....Pages 114-121
A Virtual Test Facility for Simulating Detonation-Induced Fracture of Thin Flexible Shells....Pages 122-130
Data-Driven Inverse Modelling of Ionic Polymer Conductive Composite Plates....Pages 131-138
Exploiting Real-Time 3d Visualisation to Enthuse Students: A Case Study of Using Visual Python in Engineering....Pages 139-146
Involving Undergraduates in Computational Science and Engineering Research: Successes and Challenges....Pages 147-154
A Project Based Approach to Teaching Parallel Systems....Pages 155-160
Learning by Doing: Software Projects in CSE Education....Pages 161-168
Computational Math, Science, and Technology (CMST): A Strategy to Improve STEM Workforce and Pedagogy to Improve Math and Science Education....Pages 169-176
The School of Computational Science at Florida State University....Pages 177-184
Teaching the Foundations of Computational Science on the Undergraduate Level....Pages 185-192
Computational Science: An Intermingling of Science, Mathematics, and Computer Science....Pages 193-198
A Framework for Conceptually Modelling the Domain Knowledge of an Instructional System....Pages 199-206
Platyhelminthes Are [Re]constructed Recursively....Pages 207-214
Extensions for 3D Graphics Rendering Engine Used for Direct Tessellation of Spline Surfaces....Pages 215-222
An Evolution Computation Based Approach to Synthesize Video Texture....Pages 223-230
Deformation of Dynamic Surfaces....Pages 231-238
A New Smoothing Algorithm for Quadrilateral and Hexahedral Meshes....Pages 239-246
The Calculation of Parametric NURBS Surface Interval Values Using Neural Networks....Pages 247-254
Characterizing and Covering Some Subclasses of Orthogonal Polygons....Pages 255-262
Techniques for Computing Viewpoint Entropy of a 3D Scene....Pages 263-270
3D Object Repair Using 2D Algorithms....Pages 271-278
Extraction of Ridges-Valleys for Feature-Preserving Simplification of Polygonal Models....Pages 279-286
Multiresolution 3D Rendering on Mobile Devices....Pages 287-294
Multiresolution Remeshing Using Weighted Centroidal Voronoi Diagram....Pages 295-301
Metric 3D Surface Mesh Generation Using Delaunay Criteria....Pages 302-309
A Multiresolution Model for Non-photorealistic Rendering of Trees....Pages 310-317
Model Creation by Velocity Controlled Surface Deformation....Pages 318-325
Rendering of Unorganized Points with Octagonal Splats....Pages 326-333
Statistical Based Vectorization for Standard Vector Graphics....Pages 334-341
Robustly Computing Intersection Curves of Two Canal Surfaces with Quadric Decomposition....Pages 342-349
Triangle Strip Multiresolution Modelling Using Sorted Edges....Pages 350-357
Improvement Construction for Planar G2 Transition Curve Between Two Separated Circles....Pages 358-361
B-Spline Curve Fitting Using Dominant Points....Pages 362-366
Quality and Performance Evaluation of Ray-Space Interpolation for Free Viewpoint Video Systems....Pages 367-370
Framework for Adaptive Sampling of Point-Based Surfaces Using Geometry and Color Attributes....Pages 371-374
Normalizing Relational Database Schemas Using Mathematica....Pages 375-382
Extending Maple Capabilities for Solving and Displaying Inequalities....Pages 383-390
Phase Response Curves, Delays and Synchronization in Matlab ....Pages 391-398
A Hybrid Approach for Normal Factorization of Polynomials....Pages 399-406
Computer Algebra for the Formation of Structural Matrices of Piezoceramic Finite Elements....Pages 407-413
Symbolic Analysis of Economical Models with Mathematica....Pages 414-421
Polarizable Theta-Stable Parabolic Subalgebras and K ℂ -Saturation in the Non-compact Real Forms of G 2 and F 4 ....Pages 422-429
Dynamic Load Balancing with MatlabMPI....Pages 430-437
Maple Implementation of the Chor-Rivest Cryptosystem....Pages 438-445
Development of TRIP: Fast Sparse Multivariate Polynomial Multiplication Using Burst Tries....Pages 446-453
A Symbolic Approach to Quantum Computation Simulation....Pages 454-461
Development of SyNRAC ....Pages 462-469
Automated Discovery in Elementary Extrema Problems....Pages 470-477
Stabilizing Second-Order Linear Dynamic Systems Via Hybrid Output Feedback Controls....Pages 478-485
Computation of the Adjoint Matrix....Pages 486-489
MathBlackBoard as Effective Tool in Classroom....Pages 490-493
Finding Inefficiencies in OpenMP Applications Automatically with Periscope....Pages 494-501
Analysis of the Spatial and Temporal Locality in Data Accesses....Pages 502-509
A Performance Profile and Test Tool for Development of Embedded Software Using Various Report Views....Pages 510-517
SCE Toolboxes for the Development of High-Level Parallel Applications....Pages 518-525
Introducing the Open Trace Format (OTF)....Pages 526-533
Dynamic Instrumentation of Distributed Java Applications Using Bytecode Modifications....Pages 534-541
Fine-Grained Instrumentation and Monitoring of Legacy Applications in a Service-Oriented Environment....Pages 542-548
Monitoring of WS-Based Applications....Pages 549-556
Using Sequential Debugging Techniques with Massively Parallel Programs....Pages 557-564
Workflow for Integrated Object Detection in Collaborative Video Annotation Environments....Pages 565-572
RMIX: A Dynamic, Heterogeneous, Reconfigurable Communication Framework....Pages 573-580
Developing Collaborative Social Software....Pages 581-586
An Efficient and Reflective Event Filtering for Context-Awareness in Ubiquitous Computing....Pages 587-594
Creation and Control of Interactive Virtual Environments....Pages 595-602
Using Haptics to Improve Immersion in Virtual Environments....Pages 603-609
A Novel Navigation Algorithm for Locomotion Interfaces with Programmable Platforms....Pages 610-617
Efficient and Practical Algorithms for Deducing the History of Recombination in Populations....Pages 618-619
Chordal Graphs in Computational Biology – New Insights and Applications....Pages 620-621
Exemplar Longest Common Subsequence....Pages 622-629
Synonymous Codon Substitution Matrices....Pages 630-637
SEPA: Approximate Non-subjective Empirical p -Value Estimation for Nucleotide Sequence Alignment....Pages 638-645
Multiple Sequence Alignment by Ant Colony Optimization and Divide-and-Conquer....Pages 646-653
COMBAT: Search Rapidly for Highly Similar Protein-Coding Sequences Using Bipartite Graph Matching....Pages 654-661
Missing Values Estimation in Microarray Data with Partial Least Squares Regression....Pages 662-669
Boost Feature Subset Selection: A New Gene Selection Algorithm for Microarray Dataset....Pages 670-677
A Hybrid Feature Selection Approach for Microarray Gene Expression Data....Pages 678-685
A Self-supervised Learning Framework for Classifying Microarray Gene Expression Data....Pages 686-693
Pooling Evidence to Identify Cell Cycle–Regulated Genes....Pages 694-701
Discovering Sequence-Structure Patterns in Proteins with Variable Secondary Structure....Pages 702-709
Clustering Support Vector Machines and Its Application to Local Protein Tertiary Structure Prediction....Pages 710-717
Extracting Protein-Protein Interactions from the Literature Using the Hidden Vector State Model....Pages 718-725
A Multilevel Approach to Identify Functional Modules in a Yeast Protein-Protein Interaction Network....Pages 726-733
Towards Detecting Protein Complexes from Protein Interaction Data....Pages 734-741
High-Throughput SNP Genotyping by SBE/SBH....Pages 742-749
Tag SNP Selection Based on Multivariate Linear Regression....Pages 750-757
Minimum Multicolored Subgraph Problem in Multiplex PCR Primer Set Selection and Population Haplotyping....Pages 758-766
Phasing of 2-SNP Genotypes Based on Non-random Mating Model....Pages 767-774
Event Models for Tumor Classification with SAGE Gene Expression Data....Pages 775-782
Genomes Containing Duplicates Are Hard to Compare....Pages 783-790
Rearrangement of Noisy Genomes....Pages 791-798
Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees....Pages 799-806
Reconstructing Ancestor-Descendant Lineages from Serially-Sampled Data: A Comparison Study....Pages 807-814
Robustness of Greedy Type Minimum Evolution Algorithms....Pages 815-821
Space and Time Efficient Algorithms for Planted Motif Search....Pages 822-829
Predictability of Rules in HIV-1 Protease Cleavage Site Analysis....Pages 830-837
Statistical Feature Selection from Chaos Game Representation for Promoter Recognition....Pages 838-845
Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L....Pages 846-854
DigitalTree: A Tool for Displaying Biological Data in Tree Structure....Pages 855-862
HiSP: A Probabilistic Data Mining Technique for Protein Classification....Pages 863-870
Cross-Ontological Analytics: Combining Associative and Hierarchical Relations in the Gene Ontologies to Assess Gene Product Similarity....Pages 871-878
A GO-Based Method for Assessing the Biological Plausibility of Regulatory Hypotheses....Pages 879-886
Delays in Biological Regulatory Networks (BRN)....Pages 887-894
Phase Transitions in Gene Knockdown Networks of Transitive RNAi....Pages 895-903
Compile-Time Energy Optimization for Parallel Applications in On-Chip Multiprocessors....Pages 904-911
Using SBASCO to Solve Reaction-Diffusion Equations in Two-Dimensional Irregular Domains....Pages 912-919
Higher Order Flattening....Pages 920-928
Combining Measurement and Stochastic Modelling to Enhance Scheduling Decisions for a Parallel Mean Value Analysis Algorithm....Pages 929-936
Joint Structured/Unstructured Parallelism Exploitation in muskel ....Pages 937-944
Co-Array Collectives: Refined Semantics for Co-Array Fortran....Pages 945-952
An Approach to Buffer Management in Java HPC Messaging....Pages 953-960
A Low Complexity and Robust Frequency Offset Estimation Algorithm for OFDM-Based WLAN Systems....Pages 961-968
Simplified Signal Detection for BLAST Architecture with ML and DFE Detectors....Pages 969-976
Scenario Decomposition Based Analysis of Next Generation Mobile Services....Pages 977-984
A Power Saving Scheme for Integrated WLAN and Cellular Networks....Pages 985-991
The Optimal Subchannel and Bit Allocation Problem for OFDM....Pages 992-995
Bluetooth Broadcasting Performance: Reliability and Throughput....Pages 996-999
An Optimized Two Factor Authenticated Key Exchange Protocol in PWLANs....Pages 1000-1007
Adaptive Clustering with Virtual Subnets Support in Ad Hoc Networks....Pages 1008-1015
A Service Management Architecture for NEMO in IPv4 and IPv6 Networks....Pages 1016-1023
Overlapped Detection Via Approximate Entropy Estimation Against Flooding Attack in Mobile Sensor Networks....Pages 1024-1032
Implementation of Next Generation Mobile Service: The Context-Aware Follow-Me Service....Pages 1033-1040
Multi-piconet Formation to Increase Channel Utilization in IEEE 802.15.3 High-Rate WPAN....Pages 1041-1049
Unencapsulated Mobile Multicast Routing for Next Generation Video Networks....Pages 1050-1057
Channel Estimation of High Rate WPAN System with Diversity Technique....Pages 1058-1064
A Timestamp Tree-Based Cache Invalidation Report Scheme in Mobile Computing Environments....Pages 1065-1068
Clustering Versus Evenly Distributing Energy Dissipation in Wireless Sensor Routing for Prolonging Network Lifetime....Pages 1069-1072
On the Effect of Heterogeneous Traffic Sources on the Network Availability for Wireless Sensor Grids....Pages 1073-1080
Selective Handover Technique on Multihomed Mobile Network Environment....Pages 1081-1088
Collaborative Trust-Based Shortest Secure Path Discovery in Mobile Ad Hoc Networks....Pages 1089-1096
An Efficient Neighbor Knowledge Based Broadcasting for Mobile Ad Hoc Networks....Pages 1097-1100
Maximum Lifetime Paths for the High Packet Delivery Ratio Using Fast Recovery in a Mobile Ad Hoc Network....Pages 1101-1104
Synonymous Codon Substitution Matrices....Pages E1-E1
Compile-Time Energy Optimization for Parallel Applications in On-Chip Multiprocessors....Pages E1-E1
Back Matter....Pages -