Computational Science – ICCS 2005: 5th International Conference, Atlanta, GA, USA, May 22-25, 2005. Proceedings, Part II

Front Matter....Pages -
Teaching High-Performance Computing on a High-Performance Cluster....Pages 1-9
Teaching High Performance Computing Parallelizing a Real Computational Science Application....Pages 10-17
Introducing Design Patterns, Graphical User Interfaces and Threads Within the Context of a High Performance Computing Application....Pages 18-26
High Performance Computing Education for Students in Computational Engineering....Pages 27-35
Integrating Teaching and Research in HPC: Experiences and Opportunities....Pages 36-43
Education and Research Challenges in Parallel Computing....Pages 44-51
Academic Challenges in Large-Scale Multiphysics Simulations....Pages 52-59
Balancing Computational Science and Computer Science Research on a Terascale Computing Facility....Pages 60-67
Computational Options for Bioinformatics Research in Evolutionary Biology....Pages 68-75
Financial Computations on Clusters Using Web Services....Pages 76-83
“Plug-and-Play” Cluster Computing HPC Designed for the Mainstream Scientist....Pages 84-90
Building an HPC Watering Hole for Boulder Area Computational Science....Pages 91-98
The Dartmouth Green Grid....Pages 99-106
Resource-Aware Parallel Adaptive Computation for Clusters....Pages 107-115
New Algorithms for Performance Trace Analysis Based on Compressed Complete Call Graphs....Pages 116-123
PARADIS: Analysis of Transaction-Based Applications in Distributed Environments....Pages 124-131
Automatic Tuning of Data Distribution Using Factoring in Master/Worker Applications....Pages 132-139
DynTG: A Tool for Interactive, Dynamic Instrumentation....Pages 140-148
Rapid Development of Application-Specific Network Performance Tests....Pages 149-157
Providing Interoperability for Java-Oriented Monitoring Tools with JINEXT....Pages 158-165
RDVIS: A Tool that Visualizes the Causes of Low Locality and Hints Program Optimizations....Pages 166-173
CacheIn: A Toolset for Comprehensive Cache Inspection....Pages 174-181
Optimization-Oriented Visualization of Cache Access Behavior....Pages 182-190
Collecting and Exploiting Cache-Reuse Metrics....Pages 191-198
Modelling and Animating Hand Wrinkles....Pages 199-206
Simulating Wrinkles in Facial Expressions on an Anatomy-Based Face....Pages 207-215
A Multiresolutional Approach for Facial Motion Retargetting Using Subdivision Wavelets....Pages 216-223
New 3D Graphics Rendering Engine Architecture for Direct Tessellation of Spline Surfaces....Pages 224-231
Fast Water Animation Using the Wave Equation with Damping....Pages 232-239
A Comparative Study of Acceleration Techniques for Geometric Visualization....Pages 240-247
Building Chinese Ancient Architectures in Seconds....Pages 248-255
Accelerated 2D Image Processing on GPUs....Pages 256-264
Consistent Spherical Parameterization....Pages 265-272
Mesh Smoothing via Adaptive Bilateral Filtering....Pages 273-280
Towards a Bayesian Approach to Robust Finding Correspondences in Multiple View Geometry Environments....Pages 281-289
Managing Deformable Objects in Cluster Rendering....Pages 290-297
Revolute Quadric Decomposition of Canal Surfaces and Its Applications....Pages 298-305
Adaptive Surface Modeling Using a Quadtree of Quadratic Finite Elements....Pages 306-313
MC Slicing for Volume Rendering Applications....Pages 314-321
Modelling and Sampling Ramified Objects with Substructure-Based Method....Pages 322-326
Integration of Multiple Segmentation Based Environment Models....Pages 327-330
On the Impulse Method for Cloth Animation....Pages 331-334
Remeshing Triangle Meshes with Boundaries....Pages 335-338
SACARI: An Immersive Remote Driving Interface for Autonomous Vehicles....Pages 339-342
A 3D Model Retrieval Method Using 2D Freehand Sketches....Pages 343-346
A 3D User Interface for Visualizing Neuron Location in Invertebrate Ganglia....Pages 347-350
The Dynamics of General Fuzzy Cellular Automata....Pages 351-359
A Cellular Automaton SIS Epidemiological Model with Spatially Clustered Recoveries....Pages 360-367
Simulating Market Dynamics with CD++....Pages 368-372
A Model of Virus Spreading Using Cell-DEVS....Pages 373-377
A Cellular Automata Model of Competition in Technology Markets with Network Externalities....Pages 378-385
Self-organizing Dynamics for Optimization....Pages 386-394
Constructibility of Signal-Crossing Solutions in von Neumann 29-State Cellular Automata....Pages 395-403
Evolutionary Discovery of Arbitrary Self-replicating Structures....Pages 404-411
Modelling Ant Brood Tending Behavior with Cellular Automata....Pages 412-419
A Realistic Cellular Automata Model to Simulate Traffic Flow at Urban Roundabouts....Pages 420-427
Probing the Eddies of Dancing Emergence: Complexity and Abstract Painting....Pages 428-435
Enhanced TCP with End-to-End Bandwidth and Loss Differentiation Estimate over Heterogeneous Networks....Pages 436-443
Content-Aware Automatic QoS Provisioning for UpnP AV-Based Multimedia Services over Wireless LANs....Pages 444-452
Simulation Framework for Wireless Internet Access Networks....Pages 453-460
WDM: An Energy-Efficient Multi-hop Routing Algorithm for Wireless Sensor Networks....Pages 461-467
Forwarding Scheme Extension for Fast and Secure Handoff in Hierarchical MIPv6....Pages 468-476
Back-Up Chord: Chord Ring Recovery Protocol for P2P File Sharing over MANETs....Pages 477-484
PATM: Priority-Based Adaptive Topology Management for Efficient Routing in Ad Hoc Networks....Pages 485-492
Practical and Provably-Secure Multicasting over High-Delay Networks....Pages 493-501
A Novel IDS Agent Distributing Protocol for MANETs....Pages 502-509
ID-Based Secure Session Key Exchange Scheme to Reduce Registration Delay with AAA in Mobile IP Networks....Pages 510-518
An Efficient Wireless Resource Allocation Based on a Data Compressor Predictor....Pages 519-526
A Seamless Handover Mechanism for IEEE 802.16e Broadband Wireless Access....Pages 527-534
Fault Tolerant Coverage Model for Sensor Networks....Pages 535-542
Detection Algorithms Based on Chip-Level Processing for DS/CDMA Code Acquisition in Fast Fading Channels....Pages 543-550
Clustering-Based Distributed Precomputation for Quality-of-Service Routing....Pages 551-558
Traffic Grooming Algorithm Using Shortest EDPs Table in WDM Mesh Networks....Pages 559-567
Efficient Indexing of Moving Objects Using Time-Based Partitioning with R-Tree....Pages 568-575
Publish/Subscribe Systems on Node and Link Error Prone Mobile Environments....Pages 576-584
A Power Efficient Routing Protocol in Wireless Sensor Networks....Pages 585-592
Applying Mobile Agent to Intrusion Response for Ad Hoc Networks....Pages 593-600
A Vertical Handoff Decision Process and Algorithm Based on Context Information in CDMA-WLAN Interworking....Pages 601-609
Dynamic Data Driven Applications Systems: New Capabilities for Application Simulations and Measurements....Pages 610-615
Dynamic Data Driven Methodologies for Multiphysics System Modeling and Simulation....Pages 616-623
Towards Dynamically Adaptive Weather Analysis and Forecasting in LEAD....Pages 624-631
Towards a Dynamic Data Driven Application System for Wildfire Simulation....Pages 632-639
Multiscale Interpolation, Backward in Time Error Analysis for Data-Driven Contaminant Simulation....Pages 640-647
Ensemble–Based Data Assimilation for Atmospheric Chemical Transport Models....Pages 648-655
Towards Dynamic Data-Driven Optimization of Oil Well Placement....Pages 656-663
High-Fidelity Simulation of Large-Scale Structures....Pages 664-671
A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery....Pages 672-679
Structure-Based Integrative Computational and Experimental Approach for the Optimization of Drug Design....Pages 680-688
Simulation and Visualization of Air Flow Around Bat Wings During Flight....Pages 689-694
Integrating Fire, Structure and Agent Models....Pages 695-702
A Dynamic, Data-Driven, Decision Support System for Emergency Medical Services....Pages 703-711
Dynamic Data Driven Coupling of Continuous and Discrete Methods for 3D Tracking....Pages 712-720
Semi-automated Simulation Transformation for DDDAS....Pages 721-728
The Development of Dependable and Survivable Grids....Pages 729-737
On the Fundamental Tautology of Validating Data-Driven Models and Simulations....Pages 738-745
Managing Heterogeneity in a Grid Parallel Haskell....Pages 746-754
An Efficient Equi-semi-join Algorithm for Distributed Architectures....Pages 755-763
Two Fundamental Concepts in Skeletal Parallel Programming....Pages 764-771
A Formal Framework for Orthogonal Data and Control Parallelism Handling....Pages 772-780
Empirical Parallel Performance Prediction from Semantics-Based Profiling....Pages 781-789
Dynamic Memory Management in the Loci Framework....Pages 790-797
On Adaptive Mesh Refinement for Atmospheric Pollution Models....Pages 798-805
Total Energy Singular Vectors for Atmospheric Chemical Transport Models....Pages 806-813
Application of Static Adaptive Grid Techniques for Regional-Urban Multiscale Air Quality Modeling....Pages 814-821
On the Accuracy of High-Order Finite Elements in Curvilinear Coordinates....Pages 822-828
Analysis of Discrete Adjoints for Upwind Numerical Schemes....Pages 829-836
The Impact of Background Error on Incomplete Observations for 4D-Var Data Assimilation with the FSU GSM....Pages 837-844
Disjoint Segments with Maximum Density....Pages 845-850
Wiener Indices of Balanced Binary Trees....Pages 851-859
What Makes the Arc-Preserving Subsequence Problem Hard?....Pages 860-868
An Efficient Dynamic Programming Algorithm and Implementation for RNA Secondary Structure Prediction....Pages 869-876
Performance Evaluation of Protein Sequence Clustering Tools....Pages 877-885
A Data-Adaptive Approach to cDNA Microarray Image Enhancement....Pages 886-893
String Kernels of Imperfect Matches for Off-target Detection in RNA Interference....Pages 894-902
A New Kernel Based on High-Scored Pairs of Tri-peptides and Its Application in Prediction of Protein Subcellular Localization....Pages 903-910
Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides....Pages 911-918
Phylogenetic Networks, Trees, and Clusters....Pages 919-926
SWAT: A New Spliced Alignment Tool Tailored for Handling More Sequencing Errors....Pages 927-935
Simultaneous Alignment and Structure Prediction of RNAs....Pages 936-943
Clustering Using Adaptive Self-organizing Maps (ASOM) and Applications....Pages 944-951
Experimental Analysis of a New Algorithm for Partial Haplotype Completion....Pages 952-959
Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures....Pages 960-967
Profiling and Searching for RNA Pseudoknot Structures in Genomes....Pages 968-975
Integrating Text Chunking with Mixture Hidden Markov Models for Effective Biomedical Information Extraction....Pages 976-984
 k -Recombination Haplotype Inference in Pedigrees....Pages 985-993
Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays....Pages 994-1002
A Parallel Implementation for Determining Genomic Distances Under Deletion and Insertion....Pages 1003-1010
Phasing and Missing Data Recovery in Family Trios....Pages 1011-1019
Highly Scalable Algorithms for Robust String Barcoding....Pages 1020-1028
Optimal Group Testing Strktegies with Interval Queries and Their Application to Splice Site Detection....Pages 1029-1037
Virtual Gene: A Gene Selection Algorithm for Sample Classification on Microarray Datasets....Pages 1038-1045
Bulk Synchronous Parallel ML: Modular Implementation and Performance Prediction....Pages 1046-1054
Fast Expression Templates....Pages 1055-1063
Solving Coupled Geoscience Problems on High Performance Computing Platforms....Pages 1064-1071
H2O Metacomputing – Jini Lookup and Discovery....Pages 1072-1079
User Experiences with Nuclear Physics Calculations on a H2O Metacomputing System and on the BEgrid....Pages 1080-1088
Back Matter....Pages -