Computational Methods for SNPs and Haplotype Inference: DIMACS/RECOMB Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002. Revised Papers

Front Matter....Pages -
Trisomic Phase Inference....Pages 1-8
An Overview of Combinatorial Methods for Haplotype Inference....Pages 9-25
A Survey of Computational Methods for Determining Haplotypes....Pages 26-47
Haplotype Inference and Its Application in Linkage Disequilibrium Mapping....Pages 48-61
Inferring Piecewise Ancestral History from Haploid Sequences....Pages 62-73
Haplotype Blocks in Small Populations....Pages 74-83
Simulating a Coalescent Process with Recombination and Ascertainment....Pages 84-95
Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data....Pages 96-112
Parametric Bootstrap for Assessment of Goodness of Fit of Models for Block Haplotype Structure....Pages 113-123
A Coalescent-Based Approach for Complex Disease Mapping....Pages 124-130
Haplotyping as Perfect Phylogeny....Pages 131-131
Exhaustive Enumeration and Bayesian Phase Inference....Pages 132-132
How Does Choice of Polymorphism Influence Estimation of LD and Mapping?....Pages 133-133
Haplotype Inference in Random Population Samples....Pages 134-134
Bayesian Methods for Statistical Reconstruction of Haplotypes....Pages 135-135
Combinatorial Approaches to Haplotype Inference....Pages 136-136
Large Scale Recovery of Haplotypes from Genotype Data Using Imperfect Phylogeny....Pages 137-137
Haplotype Inference and Haplotype Information....Pages 138-138
Multi-locus Linkage Disequilibrium and Haplotype-Based Tests of Association....Pages 139-139
The Pattern of Polymorphism on Human Chromosome 21....Pages 140-140
Use of a Local Approximation to the Ancestral Recombination Graph for Fine Mapping Disease Genes....Pages 141-141
Insights into Recombination from Patterns of Linkage Disequilibrium....Pages 142-142
Joint Bayesian Estimation of Mutation Location and Age Using Linkage Disequilibrium....Pages 143-143
Evolutionary-Based Association Analysis Using Haplotype Data....Pages 144-144
Inferring Piecewise Ancestral History from Haploid Sequences....Pages 145-145
Testing for Differences in Haplotype Frequencies in Case-Control Studies....Pages 146-146
Haplotypes, Hotspots, and a Multilocus Model for Linkage Disequilibrium....Pages 147-147
Dynamic Programming Algorithms for Haplotype Block Partition and Applications to Association Studies....Pages 148-148
Genome Sharing in Small Populations....Pages 149-149
Patterns of Linkage Disequilibrium across Human Chromosomes 6, 21, AND 22....Pages 150-150
A Software System for Automated and Visual Analysis of Functionally Annotated Haplotypes....Pages 151-151
Assessment of Goodness of Fit of Models for Block Haplotype Structure....Pages 152-152
Back Matter....Pages -