Computational Intelligence Methods for Bioinformatics and Biostatistics: 11th International Meeting, CIBB 2014, Cambridge, UK, June 26–28, 2014, Revised Selected Papers

Front Matter....Pages -
Front Matter....Pages 1-1
GO-WAR: A Tool for Mining Weighted Association Rules from Gene Ontology Annotations....Pages 3-18
Extended Spearman and Kendall Coefficients for Gene Annotation List Correlation....Pages 19-32
Statistical Analysis of Protein Structural Features: Relationships and PCA Grouping....Pages 33-43
Exploring the Relatedness of Gene Sets....Pages 44-56
Consensus Clustering in Gene Expression....Pages 57-67
Automated Detection of Fluorescent Probes in Molecular Imaging....Pages 68-75
Applications of Network-based Survival Analysis Methods for Pathways Detection in Cancer....Pages 76-88
Improving Literature-Based Discovery with Advanced Text Mining....Pages 89-98
A New Feature Selection Methodology for K-mers Representation of DNA Sequences....Pages 99-108
Detecting Overlapping Protein Communities in Disease Networks....Pages 109-120
Approximate Abelian Periods to Find Motifs in Biological Sequences....Pages 121-130
Sem Best Shortest Paths for the Characterization of Differentially Expressed Genes....Pages 131-141
The General Regression Neural Network to Classify Barcode and mini-barcode DNA....Pages 142-155
Transcriptator: Computational Pipeline to Annotate Transcripts and Assembled Reads from RNA-Seq Data....Pages 156-169
Application of a New Ridge Estimator of the Inverse Covariance Matrix to the Reconstruction of Gene-Gene Interaction Networks....Pages 170-179
Front Matter....Pages 181-181
Estimation of a Piecewise Exponential Model by Bayesian P-splines Techniques for Prognostic Assessment and Prediction....Pages 183-198
Use of q-values to Improve a Genetic Algorithm to Identify Robust Gene Signatures....Pages 199-206
Front Matter....Pages 207-207
Drug Repurposing by Optimizing Mining of Genes Target Association....Pages 209-218
The Importance of the Regression Model in the Structure-Based Prediction of Protein-Ligand Binding....Pages 219-230
The Impact of Docking Pose Generation Error on the Prediction of Binding Affinity....Pages 231-241
Front Matter....Pages 243-243
High-Performance Haplotype Assembly....Pages 245-258
Data-Intensive Computing Infrastructure Systems for Unmodified Biological Data Analysis Pipelines....Pages 259-272
A Fine-Grained CUDA Implementation of the Multi-objective Evolutionary Approach NSGA-II: Potential Impact for Computational and Systems Biology Applications....Pages 273-284
GPGPU Implementation of a Spiking Neuronal Circuit Performing Sparse Recoding....Pages 285-297
NuChart-II: A Graph-Based Approach for Analysis and Interpretation of Hi-C Data....Pages 298-311
Back Matter....Pages -