Bioinformatics Research and Applications: 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings

Front Matter....Pages -
Phylogenetics of Heterogeneous Samples....Pages 1-1
OMG! Orthologs for Multiple Genomes - Competing Formulations....Pages 2-3
Phylogenetic Analysis of Whole Genomes....Pages 4-7
Genetic and Pharmacogenetic Studies of Neuropsychiatric Disorders: Increasingly Critical Roles of Bioinformatics Research and Applications....Pages 8-10
Genome-Phenome Association Analysis of Complex Diseases a Structured Sparse Regression Approach....Pages 11-11
Prediction of Essential Proteins by Integration of PPI Network Topology and Protein Complexes Information....Pages 12-24
Computing the Protein Binding Sites....Pages 25-36
SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity Algorithm....Pages 37-48
Prediction of Essential Genes by Mining Gene Ontology Semantics....Pages 49-60
High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUs....Pages 61-72
Component-Based Matching for Multiple Interacting RNA Sequences....Pages 73-86
A New Method for Identifying Essential Proteins Based on Edge Clustering Coefficient....Pages 87-98
Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among Extant Genomes....Pages 99-110
Algorithms to Detect Multiprotein Modularity Conserved during Evolution....Pages 111-122
The Kernel of Maximum Agreement Subtrees....Pages 123-135
A Consensus Approach to Predicting Protein Contact Map via Logistic Regression....Pages 136-147
A Linear Time Algorithm for Error-Corrected Reconciliation of Unrooted Gene Trees....Pages 148-159
Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation....Pages 160-171
The Deep Coalescence Consensus Tree Problem is Pareto on Clusters....Pages 172-183
Fast Local Search for Unrooted Robinson-Foulds Supertrees....Pages 184-196
A Metric for Phylogenetic Trees Based on Matching....Pages 197-208
Describing the Orthology Signal in a PPI Network at a Functional, Complex Level....Pages 209-226
Algorithms for Rapid Error Correction for the Gene Duplication Problem....Pages 227-239
TransDomain: A Transitive Domain-Based Method in Protein–Protein Interaction Prediction....Pages 240-252
Rapid and Accurate Generation of Peptide Sequence Tags with a Graph Search Approach....Pages 253-261
 In Silico Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer....Pages 262-273
Comparative Evaluation of Set-Level Techniques in Microarray Classification....Pages 274-285
Gene Network Modules-Based Liner Discriminant Analysis of Microarray Gene Expression Data....Pages 286-296
A Polynomial Algebra Method for Computing Exemplar Breakpoint Distance....Pages 297-305
The Maximum Clique Enumeration Problem: Algorithms, Applications and Implementations....Pages 306-319
Query-Adaptive Ranking with Support Vector Machines for Protein Homology Prediction....Pages 320-331
A Novel Core-Attachment Based Greedy Search Method for Mining Functional Modules in Protein Interaction Networks....Pages 332-343
ProPhyC: A Probabilistic Phylogenetic Model for Refining Regulatory Networks....Pages 344-357
Prediction of DNA-Binding Propensity of Proteins by the Ball-Histogram Method....Pages 358-367
Multi-label Correlated Semi-supervised Learning for Protein Function Prediction....Pages 368-379
Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNA....Pages 380-391
Accurate Estimation of Gene Expression Levels from DGE Sequencing Data....Pages 392-403
An Integrative Approach for Genomic Island Prediction in Prokaryotic Genomes....Pages 404-415
A Systematic Comparison of Genome Scale Clustering Algorithms....Pages 416-427
Mining Biological Interaction Networks Using Weighted Quasi-Bicliques....Pages 428-439
Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character Trees....Pages 440-451
Back Matter....Pages -