Assessment of C:N Ratios and Water Potential for Nitrogen Optimization in Diesel Bioremediation

Appendix: Alpha Two TraditionalAtlas Concept......Page 1
Suggestions for Further Reading......Page 51
1.1 Introduction to Layering of Bacterial Communities......Page 55
1.2 Factors Significantly Influencing Bacterial Activities and Nutrient Cycles......Page 58
1.3 Bacteria: Human Perspectives......Page 60
2.1 Historical Overview......Page 64
2.2 Challenges of Classifying "Unculturables"......Page 66
2.3 Evolutionary Trends toward Bacterial Diversity......Page 67
2.4 Two-Dimensional Grid Definition of Bacterial Communities......Page 68
2.5 Establishment of Grid Location Points for Bacterial Atlas......Page 73
2.6 Summary of Bacterial Community Grid Positioning Atlas Principles......Page 74
3.1 Historical Overview......Page 76
3.2 Definitions of Alpha-Based Bacterial Consortia......Page 80
3.3 Alpha One: Bionucleating Dispersed Consorms [ FPL  fmv: fcP 22- 04]......Page 83
3.4 Alpha Two: Organic Bioconcreting Consorms [ FPL  fmv: fcP 22- 16]......Page 84
3.5 Alpha Three: Inorganic Bioconcreting Consorms [ FPL  fmv: fcP 13- 21......Page 85
3.6 Alpha Four: Carbon- Reducing Consorms [ FPL  fmv: fcP 06- 27]......Page 86
3.8 Alpha Six: Hyperbaric Disp ersed Bionucleating Consorms [ FPL  fmv: fcP 01- 03]......Page 87
3.9 Summary......Page 88
4.1 I ntroduction......Page 90
4.2.1 Principal Alpha One Consormial Activities......Page 91
4.3 Alpha Two: Organic Bionucleating Consorms  FPL 2, 22- 16......Page 92
4.3.1 Principal Alpha Two Consormial Activities......Page 93
4.4 Alpha Three: Inorganic Bionucleating Consorms  FPL 3, 13- 21......Page 97
4.4.1 Principal Alpha Three Consormial Activities......Page 98
4.5 Alpha Four: Carbon- Reducing Consorms  FPL 4, 06- 27......Page 102
4.5.1 Principal Alpha Four Consormial Activities......Page 103
4.6.1 Principal Alpha Five Consormial Activities......Page 105
4.7 Alpha Six: Hyperbaric Disp ersed Bionucleating Consorms  FPL 6, 01- 03......Page 106
5.1 Introduction......Page 107
5.2 Defining Bacteriologically Dominated Consorms......Page 108
5.3 Categorization of Consorms......Page 109
5.3.1 Location within Environment......Page 110
5.3.2 Generated Colors......Page 111
5.3.3 Texture and Porosity......Page 114
5.3.4 Inorganic and Organic Chemistry......Page 116
5.3.5 Water Form and Content......Page 118
5.3.7 Identification of Recovered Bacterial Consorms......Page 119
5.3.8 Time-Scaled Maturation......Page 120
6.1 Introduction......Page 122
6.2 Identification of Consorms......Page 123
6.3 Determining Probability of Consormial Activity......Page 124
6.4 Symptoms of Consormial Intrusions......Page 128
6.5 Quantification of Consormial Intrusions into Environment......Page 129
6.6 Causes and Eff ects of Consorm Intrusions in Impacted Environment......Page 130
6.7 Consorm Sampling Protocols......Page 134
7.1 I ntroduction......Page 136
7.2 D efining Bacterial Consorms by Form, Function, and Habitat......Page 137
1, 19-06 FOM Foam......Page 139
1, 19-12 SN O Snow......Page 140
2, 19-07 BCH Bronchitis......Page 141
2, 15-07 CLS Cloudiness......Page 142
2, 15-18 CLW Colloidal Water......Page 143
2, 10-08 KDS Kidney Stones......Page 144
2, 09-15 MIC Microb iolog ically Influenced Corrosion......Page 145
2, 19-21 PLG Plugg ing......Page 146
2, 06-18 ROE Rotten Egg s......Page 147
2, 22-07 SHN Sheen......Page 148
2, 24-13 TCT Thatch......Page 149
2, 07-20 ULC Ulcers......Page 150
3, 10-21 BPL Black Plug Layer......Page 151
3, 19-03 CR B Carbo nates......Page 152
3, 06-16 CRS Corrosion......Page 153
3, 20-28 FRD Ferric-Rich Depo sits......Page 154
3, 15-28 MGN Manganese Nodules......Page 155
3, 10-30 PGI Pig Iron......Page 156
3, 19-21 PLG Plugg ing......Page 157
3, 10-10 SBL Sand Boils......Page 159
3, 15-17 TCL Tubercles......Page 160
4, 04-20 CDR Carbo n Dioxide Reducers......Page 161
4, 06-22 BNG Biog enic Natural Gas......Page 162
4 01-28 OIL Oil......Page 163
4, 07-19 PET Peat......Page 164
5, 15-10 GHY Gas Hydrates......Page 165
8.2 Determination of Consormial Activity by ATP Analysis......Page 166
8.3 RASI Protocol for Determining Potential ATP Activity......Page 168
8.3.1 Differentiation of RASI Procedures......Page 170
8.3.2 RASI -MIDI Protocols for Identifying Bacterial Consorms......Page 171
9.1 Introduction......Page 174
9.2 Development of BART to Determine Bacterial Activity......Page 175
9.3 BART SetUp......Page 177
9.4 Red Cap: Iron-Related Bacteria  IRB BART......Page 179
9.4.1 Qualitative Interpretation of IR B Reaction Patterns......Page 180
9.5 Black Cap: Sulfate-Reducing Bacteria  SRB BART......Page 182
9.6 Lime Green Cap: Slime-Forming Bacteria  SLYM BART......Page 184
9.7 Dark Blue Cap: Heterotrophic Bacteria  HAB BART......Page 186
9.8 Grey Cap: Denitrifying Bacteria  DN BART......Page 187
9.9 White Cap: Nitrifying Bacteria  N BART......Page 188
9.10 Purple Cap: Acid- Producing Bacteria  APB BART......Page 190
9.11 Yellow Cap: Fluorescent Pseudomonad Bacteria  FLOR BART......Page 191
9.12.1 Comparison of BART, HPC, and ATP......Page 192
9.12.3 Comparison of BART and Other Microbiological Tests......Page 193
10.2 Differentiation of Grid At las into Six Major Consormial Groups......Page 196
10.3 Alpha One: Bionucleating Disp ersed Consorms......Page 197
10.4 Alpha Two: Organic Bionucleating Consorms......Page 200
10.5 Alpha Three: Inorganic Bioconcreting Consorms......Page 204
10.6 Alpha Four: Carbon Reducing Consorms......Page 206
10.7 Alpha Five: Carbon Oxidizing Consorms......Page 209
10.9 Differentiation of Major Consorms by Grid Positions and BART Reactions......Page 211
11.1 Introduction......Page 225
11.3 Limitations of Animal Habitats on Gridded At las......Page 228
11.4 Limitations of Plant Habitats on Gridded At las......Page 229
11.6 Dominant Microbiological Eukaryotic Domains......Page 231
11.7 Bacterial Consorms Associated with Plant Activities......Page 233
11.8 Bacterial Consorms Associated with Non- Herbivoral Intest inal Streaming......Page 235
11.9 Bacterial Consorms Involved in Spoilage of Foods......Page 237
11.10 Mammalian Consormial Non-Enteric Pathogens on Gridded Atlas......Page 239
11.11 Bacterial Consorms Associated with Water Quality Issues......Page 240
11.12 Bacterial Consorms Involved in Oil, Gas, and Coal Production in Geological Media......Page 241
11.13 Bacterial Consormial Interceptors in Upward Migration of Hydrocarbons......Page 242
11.14 Bacterial Intercept ion of Groundwater Flows in Porous and Fractured Media......Page 243
12.2 1, 22- 03 CLD  Clouds......Page 246
12.3 1, 16- 12 ICE  Ice......Page 248
12.4 3, 18- 25 CCR  Concretions......Page 249
12.5 3, 18- 19 OCR  Ochres......Page 250
12.6 3, 06- 24 PTG  Pitt ing......Page 255
12.7 3, 03- 19 PFR  Perforation......Page 258
12.8 2, 09- 15 MIC  Microbiologically Influenced Corrosion......Page 260
12.9 3, 10- 21 BPL  Black Plug Layers......Page 263
12.10 3, 10- 27 BBR " Blueberries"......Page 265
12.11 3, 19- 26 RST  Rust icles......Page 266
12.12 1, 19- 06 FOM  Foam......Page 268
12.14 3, 18- 14 LSL  Lateral Slime Layer......Page 270
12.15 5. 15- 10 GHY  Gas Hydrates......Page 271
12.16 Culturing Bacterial Consorms......Page 272
12.17 Rehabilitation......Page 274
12.18 Monitoring Methodologies......Page 278
Practical Atlas For Bacterial Identification......Page 283
About The Cover......Page 284
Practical Atlas For Bacterial Identification......Page 285
Dedication......Page 287
Contents......Page 288
List Of Tables......Page 294
List Of Figures......Page 296
List Of Plates......Page 301
Preface......Page 305
Some Further Thoughts......Page 308
Acknowledgments......Page 309
Author......Page 310