Animal genomics, Volume 102

Contents......Page 3
Single topic issues and volumes......Page 6
Published and to be published single topic issues and volumes......Page 7
Preface......Page 8
From biochemical genetics to DNA sequencing and beyond: The changing face of animal genomics......Page 9
Somatic cell genetics revolutionizes cattle genomics......Page 11
Harvesting the promise......Page 13
Systems biology and data integration......Page 14
References......Page 15
Fluorescent in situ hybridisation (FISH)......Page 17
Resolving non-concordant chromosome assignments between man and cattle......Page 19
Comparative mapping analysis......Page 22
References......Page 25
Abstract......Page 26
Chromosomal assignments on the INRA hamster-bovine somatic cell hybrid panel......Page 27
Comparative map construction......Page 29
Discussion......Page 31
References......Page 32
Abstract......Page 33
Positive clone identification and secondary and tertiary screening......Page 34
Results and discussion......Page 35
Acknowledgements......Page 38
References......Page 39
Materials and methods......Page 40
Results and discussion......Page 41
References......Page 42
Abstract......Page 43
Results and discussion......Page 44
References......Page 48
Pedigree materials, phenotyping and genotyping......Page 49
Sequence data analysis......Page 50
Polymorphism/alleles frequencies......Page 51
Discussion......Page 52
References......Page 53
Genotyping......Page 54
Locus numbers of Y chromosome microsatellites......Page 55
BTAY microsatellite polymorphisms......Page 57
Acknowledgements......Page 58
References......Page 59
Abstract......Page 60
Mapping......Page 61
Markers......Page 62
Conclusions......Page 64
References......Page 65
Abstract......Page 66
Materials and methods......Page 67
Results and discussion......Page 68
References......Page 75
Ovine linkage maps......Page 77
Conclusion......Page 78
References......Page 79
cDNA library construction and arraying......Page 80
Identification of dinucleotide repeat containing cDNA clones......Page 81
Microsatellite marker development......Page 82
References......Page 85
Abstract......Page 86
Results and discussion......Page 87
Acknowledgements......Page 88
References......Page 89
Abstract......Page 90
Codon 171......Page 91
Codon 136......Page 92
Other polymorphisms......Page 93
References......Page 94
Gene mapping......Page 96
QTL and candidate genes......Page 97
Functional analysis......Page 98
References......Page 99
Abstract......Page 101
Results......Page 102
Discussion......Page 106
References......Page 109
Abstract......Page 110
Primer pairs for RH mapping......Page 111
Comparative map between swine and human chromosomes......Page 113
References......Page 116
Abstract......Page 117
Physical mapping and gene order......Page 118
Acknowledgments......Page 120
References......Page 121
Primer design......Page 122
Porcine primers and DNA amplification......Page 123
IMpRH mapping......Page 125
Discussion......Page 126
Acknowledgements......Page 127
References......Page 128
PCR amplification......Page 129
HSA1 homologies with SSC9......Page 130
HSA7 homologies with SSC9 and SSC3......Page 132
References......Page 133
Abstract......Page 134
RH mapping......Page 135
Localisation of microsatellites S0219 and S0076......Page 136
Acknowledgements......Page 138
References......Page 139
Abstract......Page 140
Polymorphism identification and genetic linkage mapping......Page 141
Results and discussion......Page 142
References......Page 144
Abstract......Page 146
Linkage and physical mapping......Page 148
Association studies......Page 149
Acknowledgements......Page 151
References......Page 152
Abstract......Page 153
Identification and analysis of single nucleotide polymorphisms......Page 154
Mapping......Page 155
Allele frequencies in extreme divergent groups of pigs......Page 156
References......Page 157
Abstract......Page 158
Genotyping......Page 159
Comparative mapping......Page 160
Discussion......Page 161
References......Page 162
Abstract......Page 164
RT-PCR analysis of the PRKAGN and CYPE7A9 transcripts......Page 165
Comparative sequence analysis of the whole ~ 126-kb region between human and pig......Page 166
Discussion......Page 171
References......Page 173
Abstract......Page 174
Single nucleotide polymorphisms (SNPs) in the porcine COL10A1 gene......Page 175
Interspecies comparison of the amino acid sequences of type X collagen......Page 177
References......Page 178
Abstract......Page 180
Discussion......Page 181
References......Page 184
Current status......Page 185
Comparative map......Page 186
Map development......Page 187
References......Page 188
Abstract......Page 190
Fluorescence in situ hybridization (FISH)......Page 191
Fingerprint analysis, Southern blot hybridization, and contig assembly......Page 193
FISH......Page 194
Acknowledgements......Page 195
References......Page 196
Materials and methods......Page 197
Results and discussion......Page 199
Acknowledgement......Page 200
References......Page 201
Abstract......Page 202
GBE1 BAC isolation......Page 203
Microsatellite allele distributions......Page 204
Discussion......Page 205
References......Page 207
Abstract......Page 208
Results......Page 209
Acknowledgments......Page 210
References......Page 211
Abstract......Page 212
Animals and DNA isolation......Page 213
Characterization of the horse PRKAG3 gene and phylogenetic analysis......Page 214
Genetic variation at the PRKAG3 locus across divergent horse breeds......Page 215
Acknowledgements......Page 216
References......Page 217
Abstract......Page 218
Results and discussion......Page 219
References......Page 222
Abstract......Page 223
Discussion......Page 224
References......Page 226
Abstract......Page 227
Genetic markers of PH and variant comparisons with DH......Page 228
Linkage relationships among loci......Page 229
Pedigree analysis......Page 230
Genetic diversity among PHs......Page 233
Acknowledgements......Page 234
References......Page 235
Abstract......Page 236
Reciprocal chromosomal painting between E. caballus and E. burchelli......Page 237
Painting E.z. hartmannae chromosomes with probes from E. caballus and E. burchelli......Page 240
Discussion......Page 241
Chromosomal mechanisms underlying the karyotype differences of E. caballus, E. burchelli and E.z. hartmannae......Page 242
References......Page 243
Mammalian genome comparisons......Page 245
Canine diseases and genetic analyses......Page 246
Linkage analyses......Page 247
Future of canine genomics......Page 248
References......Page 249
Abstract......Page 250
Results......Page 251
Discussion......Page 252
Acknowledgements......Page 253
References......Page 254
Abstract......Page 255
Selection of loci represented on the array......Page 256
Calculation of signal to background ratios......Page 257
Correlation of metaphase-based and array-based CGH data......Page 258
Discussion......Page 259
References......Page 260
Materials and methods......Page 262
Results and discussion......Page 263
References......Page 264
Fluorescence in situ hybridization......Page 265
Results and discussion......Page 266
References......Page 267
Probe source......Page 268
Results and discussion......Page 269
References......Page 271
Abstract......Page 273
Results......Page 274
Discussion......Page 275
References......Page 277
Abstract......Page 278
Overgo hybridization......Page 279
Results and discussion......Page 280
References......Page 282
Abstract......Page 283
Chromosome homology in closely related species......Page 284
Chromosome homology in distantly related species......Page 285
Karyotype evolution in marsupials......Page 286
Breakpoints......Page 290
References......Page 291
Chicken: An aging, but still attractive, model......Page 292
Complete genome sequence......Page 293
Comparative genomics......Page 294
The specter of a sequence: moon shot or gold mine?......Page 295
References......Page 296
Abstract......Page 298
BAC anchor map......Page 299
Fluorescent in situ hybridization......Page 301
BAC anchor map......Page 302
Fluorescent in situ hybridization......Page 303
References......Page 304
Abstract......Page 305
LY6E genotyping and linkage analysis......Page 306
Results......Page 307
Discussion......Page 308
References......Page 309
Abstract......Page 310
Confirmation of TR-BAC identity......Page 311
TERC sequence features......Page 312
TR-positive BAC characterization......Page 313
Discussion......Page 314
Acknowledgements......Page 317
References......Page 318
Abstract......Page 319
Non-transformed cells......Page 320
Transformed cells......Page 323
Discussion......Page 324
References......Page 325
Abstract......Page 327
Results......Page 328
Acknowledgement......Page 330
References......Page 331
Abstract......Page 341
MYL1 isoform 1......Page 342
MYL1 isoform 3......Page 343
SNP identification and verification......Page 344
Discussion......Page 345
References......Page 346
Abstract......Page 332
DNA isolation......Page 333
Locus polymorphism......Page 334
Linkage analysis......Page 337
Value of markers from other species......Page 338
Acknowledgements......Page 339
References......Page 340
Abstract......Page 348
Gene indexing......Page 349
Non-redundant clustering and assembling and annotation......Page 350
Gene ontology analysis......Page 351
Orthologous genes from other related species......Page 353
References......Page 354
Update on the horse genome mapping project......Page 356
Understanding the origin and impact of segmental duplications: A comparison of human and rodent genomes......Page 357
Towards generating a 1-Mb resolution map of the horse X chromosome......Page 358
A comparative gene map for the onager, Equus hemionus onager......Page 359
A genetic study on the history and kinship of the Einsiedler horse......Page 360
Analysis of sequence variation in genes expressed in the chicken pineal gland......Page 361
Aberrations in canine multicentric lymphomas detected with comparative genomic hybridization and a panel of single locus probes......Page 362
Update on the cattle genome mapping project......Page 363
Author Index Vol. 102, 2003......Page 364
G......Page 365
L......Page 366
T......Page 367
Contents Vol. 102, 2003......Page 368