Advances in rice genetics

Contents......Page 4
PREFACE......Page 18
ACKNOWLEDGMENTS......Page 20
Genetics and breeding of agronomic traits......Page 21
Comparing agronomic performance of breeding populations derived from anther culture and single-seed descent in rice......Page 23
Advances in breeding salt-tolerant rice varieties......Page 25
Breeding for salt tolerance in rice......Page 28
Genetic analysis and prediction of heterosis......Page 30
Relationship of parental genetic diversity with heterosis in two-line and three-line Philippine rice hybrids......Page 32
Stable high-yielding ability of japonica-indica hybrid rice......Page 35
Inheritance of fertility restoration of WA cytoplasm in sodic-tolerant rice hybrids......Page 37
Genetic analysis of temperature-sensitive genic male sterility in rice......Page 39
Complexity of inheritance of thermosensitive genic male sterility in rice......Page 40
Characterizing tropical japonicas with wide compatibility based on isozyme pattern in rice......Page 44
Effects of cytoplasm and cytoplasm-nucleus interaction in breeding japonica rice......Page 47
Genetic analysis of hybrid breakdown in a japonica/indica cross of rice......Page 50
Induction and use of japonica rice mutant R917 with broad-spectrum resistance to blast......Page 53
Partial resistance to rice blast in the tropics......Page 55
Developing near-isogenic lines for blast resistance in two genotypes of indica rice IR24 and IR49830-7-1-2-2......Page 56
Developing near-isogenic lines for rice blast resistance......Page 59
Improving field resistance to blast and eating quality in Japanese rice varieties......Page 61
Inheritance of resistance to bacterial blight in rice......Page 65
Genetic analysis of resistance to bacterial blight in rice......Page 66
Breeding bacterial blight—resistant rice cultivars at the Philippine Rice Research Institute......Page 69
Inheritance and allelic relationships of rice gall midge resistance genes in some new donors......Page 71
Genetics of submergence tolerance in rainfed rice: line × tester analysis......Page 74
Diallel analysis for cold tolerance at the germination stage in rice......Page 76
Inheritance of nitrogen efficiency under aluminum stress in upland rice lines......Page 78
Genetic mechanism of variegation of a chlorophyll mutant originated from the cross between distantly related rice varieties......Page 80
Major genes controlling spikelet number per panicle in rice......Page 83
Genetic relationship between red pericarp and fertility restoration in rice......Page 84
Genetic analysis of morphological and related taxonomic traits in rice......Page 87
Performance of backcrossed doubled-haploid lines of rice under contrasting moisture regimes: root system and grain yield components......Page 89
Developmental genetics of internodal elongation in floating rice......Page 92
Genetic divergence in photoperiod-insensitive autumn rice germplasm of northeast India......Page 94
The relationship between number of nitrogen-fixing rhizobacteria and growth pattern of rice varieties......Page 97
Genotype by environment interaction across normal and delayed planting in rainfed lowland rice environments of eastern India......Page 99
Using rice cultivar LGC-1 as a dietary food for patients with kidney disease......Page 103
Characterization of a rice mutant showing an abnormal morphology......Page 105
Genetic diversity evolution and alien introgression......Page 107
RAPD variation in carbonized rice aged 13010 and 17310 years......Page 109
Diphyletic origin of cultivated rice based on genetic analysis and archaeology......Page 111
Evolutionary and molecular genetic studies at the waxy locus in cultivated rice and wild relatives......Page 114
PCR-RFLP analysis of cpDNA and mtDNA in Oryza......Page 116
Evolutionary significance of varietal groups resistant to bacterial leaf blight in rice......Page 119
Advances in rice chromosome research 1995-2000......Page 123
Achievements in rice cytogenetics......Page 126
Advanced cytogenetics in Oryzeae......Page 129
Cell-cycle synchronization and flow karyotyping in rice......Page 131
High-resolution fluorescence in situ hybridization (FISH) for gene mapping and molecular analysis of rice chromosomes......Page 135
Analysis of meiosis in rice after mutagenic treatment......Page 137
Genomic relationships of the AA genome Oryza species......Page 138
Characterizing hybrid and backcross derivatives of O. sativa × O. minuta using species probes......Page 142
Genetic variation for perenniality in O. sativa/O. rufipogon derivatives......Page 143
Genetic population structures of Oryza glumaepatula and O. grandiglumis distributed in the Amazon flood area......Page 146
Oryza glumaepatula Steud. introgression lines in rice: identification of genes for reproductive barriers......Page 148
Advanced backcross analysis for transferring QTLs from O. rufipogon......Page 150
Wild-QTL-allele effect in the background of japonica Nipponbare and indica (IR36) cultivars......Page 153
Trait-improving wild QTL alleles identified using advanced backcross QTL analysis from a cross between cultivated rice Oryza sativa and wild rice O. rufipogon......Page 155
Using new alleles from wild rice Oryza rufipogon to improve cultivated rice (O. sativa) in Latin America......Page 158
A new gene for resistance to bacterial blight from Oryza rufipogon......Page 163
Identifying blast resistance in Oryza species and its introgression into U.S. rice cultivars......Page 165
Evaluation of O. sativa × O. glaberrima—-derived lines using microsatellite markers......Page 167
Genetic analysis of pollen sterility loci found in hybrid progeny between Oryza sativa and O. glabberima......Page 169
A rhizomatous individual obtained from interspecific BC1F1 progenies between Oryza sativa and O. longistaminata......Page 171
Identifying late heading genes in rice using Oryza glumaepatula introgression lines......Page 173
Genetic variability of tolerance for iron toxicity in different species of Oryza and their derivatives......Page 174
Identifying subspecies-specific DNA markers in rice......Page 177
Identifying RAPD markers to classify rice germplasm as indica or japonica......Page 180
DNA fingerprinting and phylogenetic analysis of Indian aromatic high-quality rice germplasm using panels of fluorescent-labeled microsatellite markers......Page 182
Fingerprinting of Indian scented rice by RAPD markers......Page 186
Relationship between heterosis in F1 hybrids and genetic similarity among parents as measured by RAPD SSR and co-ancestry analysis in japonica rice......Page 190
Reproductive barriers between japonica and indica crosses......Page 193
Genetic basis of F1 hybrid sterility and gamete formation in rice......Page 196
Developmental cytology on gametic abortion caused by induced complementary genes gal and d60 in japonica rice......Page 198
Molecular diversity and its geographical distribution in core rice germplasm......Page 202
Phenotypic diversity in embryo mutants induced by tissue culture in rice......Page 204
Genetic diversity in Korean japonica rice cultivars......Page 206
Genetic diversity based on isozyme pattern of rice germplasm in China......Page 208
Differential patterns of isozyme loci of Adh and Ldh between upland and lowland rice varieties......Page 212
Genetic diversity in seed storage proteins of Bangladeshi rice cultivars......Page 214
Genetic variation in storage protein and storage endosperm starch in local rice cultivars of Myanmar......Page 216
Variation in seed storage proteins of Pakistani rice germplasm......Page 218
Genetic diversity in rainfed lowland rice genotypes as detected by RAPD primers......Page 220
Marker-based estimation of coefficient of coancestry in rice......Page 223
Molecular cytological studies on a poly-egg rice mutant AP IV strain......Page 227
Molecular markers QTL mapping and marker-assisted selection......Page 231
The application of molecular markers in rice......Page 233
Application of molecular markers in rice breeding in the Mekong Delta of Vietnam......Page 236
Converting rice RFLP markers to PCR-based markers by the dCAPS method......Page 241
DNA markers to assess genetic purity of rice hybrids......Page 243
RAPD markers from mitochondrial DNA can distinguish male sterile and fertile cytoplasm in indica rice......Page 246
Fine mapping of the F1 pollen sterility loci S-a and S-c in rice using PCR-based markers......Page 248
Map-based cloning of the Hd1 gene controlling photoperiod sensitivity in rice......Page 250
Response of QTLs for heading date in rice at different sites from tropical to temperate regions......Page 253
Mapping quantitative trait loci controlling heading date in rice......Page 258
QTL analysis for heading date using recombinant inbred lines in rice......Page 260
Molecular mapping of Hwc-2 one of the complementary hybrid weakness genes in rice......Page 263
Molecular markers for detecting bacterial blight resistance genes in maintainer lines of rice hybrids......Page 265
Identifying major genes and QTLs for field resistance to neck blast in rice......Page 268
Mapping QTLs for partial resistance to blast in rice......Page 270
Marker-assisted selection for transferring resistance to blast in high-yielding but susceptible Jyothi......Page 273
Using microsatellite markers to select blast resistance in U.S. rice breeding lines......Page 275
Mapping a recessive gene conferring resistance to rice yellow mottle virus......Page 277
Partial resistance to rice yellow mottle virus: QTL identification genetic model and QTL efficiency analysis after marker-assisted introgression......Page 279
Constructing linkage maps of brown planthopper resistance genes Bph1 bph2 and Bph9 on rice chromosome 12......Page 283
Molecular mapping and marker-aided selection of a gene conferring resistance to an Indian biotype of brown planthopper in rice......Page 285
Mapping QTLs for brown planthopper (BPH) resistance introgressed from Oryza officinalis in rice......Page 288
RFLP mapping of antibiosis to rice green leafhopper......Page 290
Mapping of a gene ovicidal to whitebacked planthopper Sogatella furcifera Horváth in rice......Page 292
Molecular marker association for yellow stem borer resistance in rice......Page 294
Chromosome blocks are involved in adaptive gene complexes in rice landraces......Page 296
Drought tolerance in rice: QTLs marker-assisted selection and environmental interactions......Page 299
Identifying traits and molecular markers associated with components of drought tolerance in rice......Page 302
Genes/QTLs affecting flood tolerance in rice......Page 304
Mapping genes that control traits related to submergence tolerance in rice......Page 307
Identifying QTLs for cold tolerance–related traits in a Korean weedy rice......Page 311
Mapping QTLs for salt tolerance in rice......Page 314
Quantitative trait loci analysis of aluminum tolerance in rice......Page 318
Mapping QTLs for ozone resistance in rice......Page 322
Fine mapping of genes controlling intermediate amylose content in rice using bulked segregant analysis......Page 324
Association between amylose content and a microsatellite marker across exotic rice germplasm......Page 327
Molecular genetic analysis of quantitative trait loci related to rice grain quality......Page 329
Leaf senescence of a newly induced stay-green mutant and mapping of the gene in rice......Page 332
Mapping the rt (root growth-inhibiting) gene of rice by RFLP markers......Page 334
Tagging and mapping of a new elongated-uppermost-internode gene—eui2(t) —using AFLP RFLP and SSR techniques......Page 337
Map-based cloning of Ps1 a gene for pollen abortion in rice......Page 339
Sequence-tagged site marker diagnostics for the CMS fertility-restoring gene Rf-3 in rice......Page 341
Genetics and mapping of the nuclear fertility restorer gene for Honglian-type cytoplasmic male sterility in rice......Page 344
Molecular mapping and identification of QTLs for some agronomic traits in rice......Page 346
Mapping QTLs associated with tolerance for enhanced ultraviolet-B radiation in rice......Page 348
Genetic systems of cross-incompatibility as pre- and postfertilization barriers in rice......Page 350
Relationship between genetic distance and heterosis under different fertilizer applications in rice......Page 352
Isolating and characterizing molecular markers associated with seedling-stage cold tolerance in rice......Page 356
QTL analysis for discoloration of flag leaves during the ripening period in rice......Page 358
QTL analysis of root vitality in a doubled-haploid population derived from anther culture of indica/japonica rice......Page 360
Genomics......Page 363
Rice functional genomics via cDNA microarray analysis......Page 365
Developing genomics approaches for crop trait improvement......Page 370
A gene machine for rice......Page 372
Comparative genomics in the Oryzeae......Page 375
T-DNA as a potential insertional mutagen in rice......Page 378
New Ac/Ds-based constructs for efficient gene and enhancer trapping in rice......Page 382
Ac/Ds-mediated gene trap systems for functional genomics in rice......Page 385
A rice retrotransposon Tos17 as a tool for gene tagging......Page 387
Structural polymorphism found in RMU1 (rice mutator class 1) transposable elements in rice......Page 389
Isolating and characterizing cold-responsive gene-trapped lines from rice......Page 390
Constructing a physical map of the rice genome......Page 392
Centromere structure of rice chromosome 5......Page 395
Genic interaction between mutant genes related to morphogenesis of panicle and spikelet in rice......Page 397
Oryzabase: an integrated rice science database......Page 400
RiceGenes 5.0: an online genomic resource for the rice community......Page 404
CD-ROM for PC version of RiceGenes a rice-specific ACEDB......Page 406
Performing line × tester analysis with the SAS® system......Page 409
Gene isolation and function......Page 413
One super-mutator transposon family found in rice......Page 415
A maize MuDR-like tranposable element transcribed in the rice genome......Page 417
Transcriptional analysis of the Mu-like element Tnr2 in rice......Page 420
Chloroplast targeting signal regulates transgene expression in rice......Page 423
Isolation and functional characterization of the DREB family of genes in rice......Page 426
Characterization and expression of rice monosaccharide transporter genes OsMST1–3......Page 429
Functional analysis of R2R3-Myb genes in rice......Page 431
Functional analysis of MADS-box genes expressed preferentially in vegetative tissues......Page 434
Functional analysis of protein phosphatase 2C in rice......Page 436
Functions of mitochondrial aldehyde dehydrogenase in rice under anaerobic conditions......Page 438
Identification of differentially expressed genes during disease resistance response from rice by cDNA arrays......Page 441
Rice transcript RIM2 accumulates in response to Magnaporthe grisea and its predicted protein shares similarity with proteins encoded by CACTA transposons......Page 443
Chimeric receptor kinases for plant disease resistance engineering in rice......Page 445
Jasmonic acid- and salicylic acid-mediated defense signal transduction in rice......Page 449
Alternative splicing bestows capacity for nuclear expression and mitochondrial targeting in rice......Page 451
Transferring the ribosomal protein S10 gene from the mitochondrion to the nucleus in rice......Page 454
Hypothetical model of genetic regulation of the glutelin biosynthesis pathway......Page 456
The alk locus controls amylopectin structure and starch synthase activity in rice......Page 459
Biosynthesis of rice S-poor and S-rich prolamins is regulated by an independent genetic system......Page 461
Differential expression of rice genes in response to iron......Page 464
Isolating and characterizing a cDNA encoding the iron-storage protein in rice......Page 466
Identifying a novel superoxide dismutase isoform: a biological marker for evaluating drought-tolerant varieties of rice......Page 469
Inducing dehydration tolerance in rice by regulated expression of genes for transcription factors......Page 471
Molecular cloning of the salt-responsive gene in rice......Page 474
Developmental changes of phyllochron in the life cycle of rice......Page 477
Effect of starch-branching enzyme IIb on amylopectin structure and gelatinization property......Page 479
Analyses of sugar transport via the vascular system in rice......Page 482
Alteration of rice floral organ identity by ectopic expression of the rice MADS-box gene......Page 485
Expression analyses of the OsPNH1 gene in rice leaf development......Page 488
Gene expression pattern of cell division/elongation factors in rice dwarf mutants......Page 490
Expressed sequence tag analysis of developing seed coat and characterization of the Ran gene in rice......Page 493
Complex organization of the rice Purple leaf locus involved in tissue-specific accumulation of anthocyanin......Page 495
Slender rice mutant is caused by null mutation of the SLR gene an ortholog of the height- regulating gene GAI/RGA/RHT/D8......Page 498
Characterizing a slender mutant with constitutive gibberellin-response in rice......Page 500
Molecular basis of 5-methyltryptophan-resistant rice......Page 502
Positional cloning of candidates for Xa4 in rice......Page 505
Antifreeze proteins: a molecular approach for developing cold-tolerant rice......Page 508
Arresting sexual embryo development in rice using DMC1 and REE5 genes......Page 510
Assessing the genetic propensity of rice for nodulation......Page 512
Tissue culture and transformation......Page 515
Production of allohexaploid somatic hybrid plants by electrofusing mesophyll protoplasts of Porteresia coarctata (Roxb.) Tateoka and cell suspension-derived protoplasts of Oryza sativa L.......Page 517
Enhancing salinity tolerance in rice using sexual and somatic hybrids of Oryza sativa and Porteresia coarctata......Page 520
Protoplast fusion for developing novel sources of rice cytoplasmic male sterility......Page 521
Improved methods for anther and pollen culture in rice......Page 523
Androgenesis in aromatic rice hybrids......Page 526
Effect of maltose on anther culture of Tongil and indica rice......Page 528
Selection of high green-plant regenerating lines through rice anther culture......Page 529
Developing restorer lines in rice through anther culture......Page 532
Developing blast-resistant lines in rice through tissue culture methods......Page 533
Induction and use of somatic embryogenesis in rice improvement......Page 534
Histological analysis of cell proliferation in early stages of rice seed culture......Page 537
Factors influencing callus induction and plant regeneration from young panicles of rice......Page 538
Tissue culture studies on japonica × indica crosses in rice......Page 540
Identifying molecular markers associated with tissue culture performance in diverse rice germplasm......Page 542
In vitro selection and rapid screening of high-lysine mutants in rice......Page 546
Producing stable androclonal variants with improved agronomic traits in indica rice......Page 547
Somaclonal restorable variation in cytoplasmic male sterile lines with cytoplasm from two wild species of Oryza......Page 551
Studies on the cryopreservation of cell suspension cultures of Iranian indica and japonica rice cultivars......Page 553
Clean DNA transformation: co-integration and expression analysis of five minimal transgene cassettes in rice......Page 556
Effects of matrix attachment regions (MARs) on transgene expression levels and stability in rice......Page 558
Double-right-border (DRB) binary vectors for producing selectable marker-free transgenic rice......Page 561
Transforming rice with multiple plasmids......Page 564
Construction of three transgenic rice populations by maize transposable element Ac/Dc mutagenesis via Agrobacterium tumefaciens......Page 567
Transgene structure and expression in a large population of rice plants and their progenies......Page 570
Organ-specific gene expression and genetic transformation for improving rice......Page 572
Rice transformation for resistance to stem borer......Page 575
Introducing the CryIA(c) gene into basmati rice and transmitting transgenes to R3 progeny......Page 578
Wound-inducible expression of the Bacillus thuringiensis Cry1B gene in transgenic rice......Page 580
Inheritance of cry1A(b) and snowdrop lectin gna genes in transgenic javanica rice progenies and bioassays for resistance to brown planthopper and yellow stem borer......Page 585
Insect bioassays of transgenic indica rice carrying a synthetic Bt toxin gene cry1A(c)......Page 587
Genotype screening of japonica rice cultivars for Agrobacterium-mediated transformation......Page 590
Transgenic IR72 lines resistant to nine Philippine races of Xanthomonas oryzae pv. oryzae......Page 593
Characterizing blast-tolerant transgenic rice constitutively expressing the chitinase of the beta-glucanase gene......Page 595
Blast-resistant transgenic rice with a phytoalexin gene......Page 597
Production of abiotic stress-tolerant transgenic rice plants......Page 599
Genetic engineering of salt and drought tolerance in rice cultivars......Page 602
Improved transgene expression systems and dehydration-tolerant transgenic rice plants......Page 604
Rice histone deacetylase: characterization and expression in transgenic rice plants......Page 607
Transgenic rice resistant to imidazolinone herbicides......Page 610
Producing transgenic Basmati rice with the potato protease inhibitor II (PinII) gene by Agrobacterium-mediated transformation......Page 613
Genetic analysis and field testing of elite rice cultivars transformed with the antisense waxy gene......Page 616
Transforming indica rice cultivars grown in Vietnam using Agrobacterium tumefaciens or particle bombardment......Page 618
Manipulation of ADP-glucose pyrophosphorylase in starch biosynthesis during rice seed development......Page 621
Modification of starch branching degree in transgenic rice......Page 624
Molecular breeding of rice by modulating gibberellin metabolic pathway......Page 627
Molecular tools for manipulating rice development: markers for cell proliferation......Page 630
Function of Cre/lox site-specific recombination system in the rice genome and its implication......Page 632
Genetics of rice pathogens......Page 637
Developing and using SCAR (sequence characterized amplified regions) to analyze Magnaporthe grisea populations pathogenic to rice......Page 639
Genetics of host range in Magnaporthe grisea......Page 641
Genetic analysis of interaction between rice and the blast pathogen in Thailand......Page 644
Diversity of Pyricularia grisea populations in Thailand......Page 647
Relation between molecular profile and avirulence pattern of Thai isolates of the rice blast pathogen......Page 650
Molecular genetic characterization of the rice blast (Pyricularia grisea) population in Thailand......Page 653
Pathogenicity of blast isolates in rice......Page 657
Race differentiation of bacterial leaf blight of rice in DPR Korea......Page 660